Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 PHGDH-209ENST00000641074 1780 ntBASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 AC079781.3-201ENST00000449110 356 ntBASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 AL732292.2-201ENST00000609649 430 ntBASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 AC093677.2-201ENST00000600169 1863 ntBASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
NKX2-3Q8TAU0 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 KRT18P13-201ENST00000400056 1290 ntBASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 SLC25A6P4-201ENST00000586535 553 ntBASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 RNF165-205ENST00000588679 2904 ntBASIC21.56■■□□□ 1.04
NKX2-3Q8TAU0 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 CHCHD2P8-201ENST00000429873 447 ntBASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 AP002469.2-201ENST00000531724 424 ntBASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC21.55■■□□□ 1.04
NKX2-3Q8TAU0 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 TEX30-205ENST00000376029 959 ntTSL 2 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 RPP21-221ENST00000428040 594 ntTSL 2 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 SPEG-225ENST00000617028 815 ntTSL 5 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
NKX2-3Q8TAU0 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
NKX2-3Q8TAU0 AC132938.6-201ENST00000623828 1655 ntBASIC21.53■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms