Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 Z82202.1-201ENST00000623446 1880 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 KRT8P11-201ENST00000409686 1436 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 IRX1P1-201ENST00000438849 1838 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 AC008556.1-201ENST00000610908 2040 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 LITAF-220ENST00000620789 692 ntTSL 5 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 TCF3P1-201ENST00000423021 1937 ntBASIC5.64□□□□□ -1.51
SYNE1Q8NF91 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
SYNE1Q8NF91 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 AC111152.3-201ENST00000569699 673 ntBASIC5.63□□□□□ -1.51
SYNE1Q8NF91 AC004408.2-201ENST00000623613 2777 ntBASIC5.63□□□□□ -1.51
SYNE1Q8NF91 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC5.63□□□□□ -1.51
SYNE1Q8NF91 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms