Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC14.57□□□□□ -0.08
CLRN3Q8NCR9 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 WT1-209ENST00000530998 2421 ntTSL 2 BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLRN3Q8NCR9 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 PEMT-206ENST00000435340 960 ntTSL 5 BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLRN3Q8NCR9 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 NME9-203ENST00000383180 2133 ntTSL 2 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLRN3Q8NCR9 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms