Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 KRT18P22-201ENST00000402024 1347 ntBASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.13■□□□□ 0.49
ZNF549Q6P9A3 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 AL138966.2-201ENST00000621997 464 ntBASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
ZNF549Q6P9A3 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 NEK4P2-201ENST00000580004 1012 ntBASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
ZNF549Q6P9A3 AC026471.1-201ENST00000564629 3026 ntBASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 AL512604.3-201ENST00000569583 964 ntBASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 GPX4-207ENST00000589115 812 ntTSL 2 BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
ZNF549Q6P9A3 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms