Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC21.15■□□□□ 0.98
KRT40Q6A162 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.15■□□□□ 0.98
KRT40Q6A162 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
KRT40Q6A162 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
KRT40Q6A162 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.15■□□□□ 0.98
KRT40Q6A162 PCED1CP-201ENST00000419887 785 ntBASIC21.15■□□□□ 0.98
KRT40Q6A162 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC21.15■□□□□ 0.98
KRT40Q6A162 YBX1P2-201ENST00000489612 999 ntBASIC21.15■□□□□ 0.98
KRT40Q6A162 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT40Q6A162 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC21.15■□□□□ 0.98
KRT40Q6A162 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
KRT40Q6A162 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
KRT40Q6A162 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC21.15■□□□□ 0.98
KRT40Q6A162 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT40Q6A162 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT40Q6A162 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT40Q6A162 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
KRT40Q6A162 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT40Q6A162 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
KRT40Q6A162 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
KRT40Q6A162 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
KRT40Q6A162 AL133373.2-201ENST00000623187 2828 ntBASIC21.14■□□□□ 0.98
KRT40Q6A162 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
KRT40Q6A162 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
KRT40Q6A162 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
KRT40Q6A162 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
KRT40Q6A162 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC21.14■□□□□ 0.98
KRT40Q6A162 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
KRT40Q6A162 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
KRT40Q6A162 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
KRT40Q6A162 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
KRT40Q6A162 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
KRT40Q6A162 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
KRT40Q6A162 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.14■□□□□ 0.97
KRT40Q6A162 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.14■□□□□ 0.97
KRT40Q6A162 FAM86EP-206ENST00000510506 987 ntBASIC21.14■□□□□ 0.97
KRT40Q6A162 PP7080-204ENST00000510714 601 ntTSL 3 BASIC21.14■□□□□ 0.97
KRT40Q6A162 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
KRT40Q6A162 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
KRT40Q6A162 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.14■□□□□ 0.97
KRT40Q6A162 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
KRT40Q6A162 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
KRT40Q6A162 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
KRT40Q6A162 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC21.14■□□□□ 0.97
KRT40Q6A162 AL096828.2-201ENST00000567259 1965 ntBASIC21.14■□□□□ 0.97
KRT40Q6A162 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC21.13■□□□□ 0.97
KRT40Q6A162 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.13■□□□□ 0.97
KRT40Q6A162 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC21.13■□□□□ 0.97
KRT40Q6A162 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC21.13■□□□□ 0.97
KRT40Q6A162 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.13■□□□□ 0.97
KRT40Q6A162 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
KRT40Q6A162 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC21.13■□□□□ 0.97
KRT40Q6A162 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
KRT40Q6A162 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
KRT40Q6A162 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
KRT40Q6A162 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT40Q6A162 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC21.13■□□□□ 0.97
KRT40Q6A162 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC21.13■□□□□ 0.97
KRT40Q6A162 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 AL024508.2-201ENST00000607749 1894 ntBASIC21.12■□□□□ 0.97
KRT40Q6A162 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.12■□□□□ 0.97
KRT40Q6A162 TSPY5P-201ENST00000426936 936 ntBASIC21.12■□□□□ 0.97
KRT40Q6A162 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
KRT40Q6A162 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
KRT40Q6A162 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.12■□□□□ 0.97
KRT40Q6A162 AC009065.1-201ENST00000564055 1225 ntBASIC21.12■□□□□ 0.97
KRT40Q6A162 MIR3917-201ENST00000580971 93 ntBASIC21.12■□□□□ 0.97
KRT40Q6A162 DBP-204ENST00000599385 709 ntTSL 3 BASIC21.12■□□□□ 0.97
KRT40Q6A162 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.12■□□□□ 0.97
KRT40Q6A162 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.12■□□□□ 0.97
KRT40Q6A162 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
KRT40Q6A162 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.12■□□□□ 0.97
KRT40Q6A162 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT40Q6A162 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms