Protein–RNA interactions for Protein: Q5UIP0

RIF1, Telomere-associated protein RIF1, humanhuman

Known RBP Predictions only

Length 2,472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1Q5UIP0 DUX4L27-201ENST00000554796 1261 ntBASIC17.63■□□□□ 0.41
RIF1Q5UIP0 KRT19P2-202ENST00000557173 1012 ntBASIC17.63■□□□□ 0.41
RIF1Q5UIP0 AC010336.2-201ENST00000564226 506 ntBASIC17.63■□□□□ 0.41
RIF1Q5UIP0 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 AC009154.2-201ENST00000621177 724 ntBASIC17.63■□□□□ 0.41
RIF1Q5UIP0 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 PMPCAP1-201ENST00000508114 1576 ntBASIC17.63■□□□□ 0.41
RIF1Q5UIP0 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
RIF1Q5UIP0 AL512408.1-201ENST00000569378 2000 ntBASIC17.63■□□□□ 0.41
RIF1Q5UIP0 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 ARSEP1-201ENST00000420443 635 ntBASIC17.62■□□□□ 0.41
RIF1Q5UIP0 FAM58CP-201ENST00000435741 640 ntBASIC17.62■□□□□ 0.41
RIF1Q5UIP0 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.62■□□□□ 0.41
RIF1Q5UIP0 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 BX005266.1-201ENST00000473402 457 ntBASIC17.61■□□□□ 0.41
RIF1Q5UIP0 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 LINC02560-201ENST00000596379 459 ntBASIC17.61■□□□□ 0.41
RIF1Q5UIP0 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RIF1Q5UIP0 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 NME2P1-201ENST00000426182 414 ntBASIC17.6■□□□□ 0.41
RIF1Q5UIP0 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 AL163051.1-201ENST00000569214 1512 ntBASIC17.6■□□□□ 0.41
RIF1Q5UIP0 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 SRP9-204ENST00000619790 377 ntTSL 2 BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
RIF1Q5UIP0 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms