Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
USP39Q53GS9 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.54■□□□□ 0.56
USP39Q53GS9 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
USP39Q53GS9 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.53■□□□□ 0.56
USP39Q53GS9 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
USP39Q53GS9 AL049812.1-201ENST00000432563 2267 ntBASIC18.53■□□□□ 0.56
USP39Q53GS9 HLA-A-201ENST00000376802 1334 ntBASIC18.53■□□□□ 0.56
USP39Q53GS9 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
USP39Q53GS9 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.53■□□□□ 0.56
USP39Q53GS9 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.53■□□□□ 0.56
USP39Q53GS9 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.53■□□□□ 0.56
USP39Q53GS9 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 SAPCD2P3-201ENST00000455031 850 ntBASIC18.53■□□□□ 0.56
USP39Q53GS9 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.53■□□□□ 0.56
USP39Q53GS9 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.53■□□□□ 0.56
USP39Q53GS9 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC18.53■□□□□ 0.56
USP39Q53GS9 AC120114.3-201ENST00000611923 658 ntBASIC18.53■□□□□ 0.56
USP39Q53GS9 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
USP39Q53GS9 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
USP39Q53GS9 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.53■□□□□ 0.56
USP39Q53GS9 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 AC006333.2-201ENST00000607957 2099 ntBASIC18.53■□□□□ 0.56
USP39Q53GS9 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC18.53■□□□□ 0.56
USP39Q53GS9 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USP39Q53GS9 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC18.53■□□□□ 0.56
USP39Q53GS9 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.52■□□□□ 0.56
USP39Q53GS9 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USP39Q53GS9 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP39Q53GS9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP39Q53GS9 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP39Q53GS9 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP39Q53GS9 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.52■□□□□ 0.56
USP39Q53GS9 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP39Q53GS9 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.52■□□□□ 0.56
USP39Q53GS9 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP39Q53GS9 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP39Q53GS9 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USP39Q53GS9 TEX30-205ENST00000376029 959 ntTSL 2 BASIC18.52■□□□□ 0.56
USP39Q53GS9 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.52■□□□□ 0.56
USP39Q53GS9 AL590627.1-203ENST00000421194 1026 ntBASIC18.52■□□□□ 0.56
USP39Q53GS9 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.52■□□□□ 0.56
USP39Q53GS9 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC18.52■□□□□ 0.56
USP39Q53GS9 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC18.52■□□□□ 0.56
USP39Q53GS9 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.56
USP39Q53GS9 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.52■□□□□ 0.56
USP39Q53GS9 CROCCP3-202ENST00000420820 1947 ntBASIC18.52■□□□□ 0.56
USP39Q53GS9 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
USP39Q53GS9 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
USP39Q53GS9 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
USP39Q53GS9 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
USP39Q53GS9 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
USP39Q53GS9 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.55
USP39Q53GS9 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
USP39Q53GS9 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
USP39Q53GS9 KRT8P32-201ENST00000512863 1461 ntBASIC18.52■□□□□ 0.55
USP39Q53GS9 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
USP39Q53GS9 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
USP39Q53GS9 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
USP39Q53GS9 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP39Q53GS9 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USP39Q53GS9 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
USP39Q53GS9 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USP39Q53GS9 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.51■□□□□ 0.55
USP39Q53GS9 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USP39Q53GS9 NSUN5P1-202ENST00000421140 1535 ntBASIC18.51■□□□□ 0.55
USP39Q53GS9 NSUN5P2-203ENST00000457352 1529 ntBASIC18.51■□□□□ 0.55
USP39Q53GS9 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.51■□□□□ 0.55
USP39Q53GS9 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP39Q53GS9 AP000593.1-201ENST00000393668 712 ntBASIC18.51■□□□□ 0.55
USP39Q53GS9 MINOS1P3-201ENST00000457048 203 ntBASIC18.51■□□□□ 0.55
USP39Q53GS9 RN7SL606P-201ENST00000472779 293 ntBASIC18.51■□□□□ 0.55
USP39Q53GS9 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.51■□□□□ 0.55
USP39Q53GS9 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.51■□□□□ 0.55
USP39Q53GS9 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.51■□□□□ 0.55
USP39Q53GS9 ABR-204ENST00000543210 1049 ntTSL 2 BASIC18.51■□□□□ 0.55
USP39Q53GS9 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.51■□□□□ 0.55
USP39Q53GS9 ABR-217ENST00000572441 563 ntTSL 4 BASIC18.51■□□□□ 0.55
USP39Q53GS9 AC117500.6-201ENST00000624871 588 ntBASIC18.51■□□□□ 0.55
USP39Q53GS9 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.51■□□□□ 0.55
USP39Q53GS9 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC18.51■□□□□ 0.55
USP39Q53GS9 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.51■□□□□ 0.55
USP39Q53GS9 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.51■□□□□ 0.55
USP39Q53GS9 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USP39Q53GS9 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms