Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 AC010947.1-201ENST00000623454 693 ntBASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 AC068880.1-201ENST00000507289 2297 ntBASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC40Q4G0X9 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 AC093827.2-201ENST00000512654 315 ntBASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.09■□□□□ 0.81
CCDC40Q4G0X9 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CCDC40Q4G0X9 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.08■□□□□ 0.8
CCDC40Q4G0X9 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC40Q4G0X9 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC40Q4G0X9 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC40Q4G0X9 AL096828.2-201ENST00000567259 1965 ntBASIC20.08■□□□□ 0.8
CCDC40Q4G0X9 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC40Q4G0X9 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.08■□□□□ 0.8
CCDC40Q4G0X9 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CCDC40Q4G0X9 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
CCDC40Q4G0X9 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 AC138028.4-201ENST00000564984 1845 ntBASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.07■□□□□ 0.8
CCDC40Q4G0X9 AC104390.1-201ENST00000555663 520 ntBASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms