Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC16.1■□□□□ 0.17
SOX2P48431 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
SOX2P48431 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
SOX2P48431 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX2P48431 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC16.1■□□□□ 0.17
SOX2P48431 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.1■□□□□ 0.17
SOX2P48431 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX2P48431 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
SOX2P48431 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC16.09■□□□□ 0.17
SOX2P48431 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
SOX2P48431 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.09■□□□□ 0.17
SOX2P48431 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC16.09■□□□□ 0.17
SOX2P48431 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC16.09■□□□□ 0.17
SOX2P48431 MMAB-206ENST00000540016 945 ntTSL 3 BASIC16.09■□□□□ 0.17
SOX2P48431 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.09■□□□□ 0.17
SOX2P48431 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC16.09■□□□□ 0.17
SOX2P48431 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
SOX2P48431 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
SOX2P48431 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.09■□□□□ 0.17
SOX2P48431 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
SOX2P48431 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.09■□□□□ 0.17
SOX2P48431 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC16.09■□□□□ 0.17
SOX2P48431 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.09■□□□□ 0.17
SOX2P48431 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
SOX2P48431 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.08■□□□□ 0.17
SOX2P48431 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
SOX2P48431 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.17
SOX2P48431 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.08■□□□□ 0.17
SOX2P48431 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
SOX2P48431 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.08■□□□□ 0.17
SOX2P48431 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SOX2P48431 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
SOX2P48431 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SOX2P48431 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SOX2P48431 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC16.08■□□□□ 0.16
SOX2P48431 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX2P48431 KSR1P1-201ENST00000446298 240 ntBASIC16.08■□□□□ 0.16
SOX2P48431 AC008040.2-201ENST00000461049 708 ntBASIC16.08■□□□□ 0.16
SOX2P48431 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
SOX2P48431 CR392000.1-201ENST00000624770 1228 ntBASIC16.08■□□□□ 0.16
SOX2P48431 CABP2-204ENST00000636477 941 ntTSL 5 BASIC16.08■□□□□ 0.16
SOX2P48431 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX2P48431 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.08■□□□□ 0.16
SOX2P48431 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
SOX2P48431 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SOX2P48431 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX2P48431 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX2P48431 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
SOX2P48431 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.08■□□□□ 0.16
SOX2P48431 GMCL1P1-201ENST00000463439 1581 ntBASIC16.08■□□□□ 0.16
SOX2P48431 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX2P48431 AL109659.2-201ENST00000606809 1674 ntBASIC16.08■□□□□ 0.16
SOX2P48431 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
SOX2P48431 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SOX2P48431 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
SOX2P48431 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
SOX2P48431 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
SOX2P48431 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX2P48431 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX2P48431 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
SOX2P48431 ISG20-202ENST00000379224 540 ntTSL 3 BASIC16.07■□□□□ 0.16
SOX2P48431 FAM207BP-201ENST00000447172 505 ntBASIC16.07■□□□□ 0.16
SOX2P48431 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC16.07■□□□□ 0.16
SOX2P48431 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC16.07■□□□□ 0.16
SOX2P48431 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.07■□□□□ 0.16
SOX2P48431 AC090192.1-201ENST00000517740 490 ntBASIC16.07■□□□□ 0.16
SOX2P48431 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SOX2P48431 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SOX2P48431 KRT16P1-201ENST00000399124 1418 ntBASIC16.07■□□□□ 0.16
SOX2P48431 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX2P48431 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SOX2P48431 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX2P48431 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC16.07■□□□□ 0.16
SOX2P48431 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
SOX2P48431 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX2P48431 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SOX2P48431 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.07■□□□□ 0.16
SOX2P48431 AC012317.2-201ENST00000623305 2251 ntBASIC16.07■□□□□ 0.16
SOX2P48431 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
SOX2P48431 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
SOX2P48431 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms