Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 AL390955.2-201ENST00000603032 514 ntBASIC20.44■□□□□ 0.86
HTTP42858 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.44■□□□□ 0.86
HTTP42858 METTL26-204ENST00000397665 558 ntTSL 2 BASIC20.44■□□□□ 0.86
HTTP42858 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC20.44■□□□□ 0.86
HTTP42858 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HTTP42858 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
HTTP42858 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.44■□□□□ 0.86
HTTP42858 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC20.44■□□□□ 0.86
HTTP42858 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
HTTP42858 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC20.43■□□□□ 0.86
HTTP42858 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HTTP42858 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC20.43■□□□□ 0.86
HTTP42858 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HTTP42858 HCG4B-203ENST00000450128 991 ntBASIC20.43■□□□□ 0.86
HTTP42858 AC136632.2-201ENST00000512891 861 ntBASIC20.43■□□□□ 0.86
HTTP42858 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
HTTP42858 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC20.43■□□□□ 0.86
HTTP42858 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HTTP42858 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HTTP42858 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HTTP42858 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.43■□□□□ 0.86
HTTP42858 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HTTP42858 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HTTP42858 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HTTP42858 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC20.43■□□□□ 0.86
HTTP42858 GSAP-205ENST00000430584 600 ntTSL 5 BASIC20.43■□□□□ 0.86
HTTP42858 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC20.43■□□□□ 0.86
HTTP42858 UROS-202ENST00000368778 1556 ntTSL 2 BASIC20.43■□□□□ 0.86
HTTP42858 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
HTTP42858 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC20.43■□□□□ 0.86
HTTP42858 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HTTP42858 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC20.42■□□□□ 0.86
HTTP42858 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC20.42■□□□□ 0.86
HTTP42858 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC20.42■□□□□ 0.86
HTTP42858 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HTTP42858 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HTTP42858 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HTTP42858 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HTTP42858 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
HTTP42858 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC20.42■□□□□ 0.86
HTTP42858 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HTTP42858 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HTTP42858 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HTTP42858 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HTTP42858 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HTTP42858 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HTTP42858 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.42■□□□□ 0.86
HTTP42858 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HTTP42858 AC079776.2-201ENST00000641154 1609 ntBASIC20.42■□□□□ 0.86
HTTP42858 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HTTP42858 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.42■□□□□ 0.86
HTTP42858 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC20.42■□□□□ 0.86
HTTP42858 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HTTP42858 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC20.41■□□□□ 0.86
HTTP42858 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
HTTP42858 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HTTP42858 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HTTP42858 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HTTP42858 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC20.41■□□□□ 0.86
HTTP42858 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HTTP42858 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HTTP42858 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.41■□□□□ 0.86
HTTP42858 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HTTP42858 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HTTP42858 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HTTP42858 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC20.41■□□□□ 0.86
HTTP42858 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC20.41■□□□□ 0.86
HTTP42858 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HTTP42858 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC20.41■□□□□ 0.86
HTTP42858 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HTTP42858 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HTTP42858 SDHAP2-201ENST00000455183 2001 ntBASIC20.41■□□□□ 0.86
HTTP42858 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HTTP42858 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HTTP42858 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.41■□□□□ 0.86
HTTP42858 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC20.4■□□□□ 0.86
HTTP42858 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HTTP42858 CD82-202ENST00000342935 967 ntTSL 5 BASIC20.4■□□□□ 0.86
HTTP42858 GAPDHP21-201ENST00000450301 1010 ntBASIC20.4■□□□□ 0.86
HTTP42858 AP000344.2-201ENST00000512987 629 ntBASIC20.4■□□□□ 0.86
HTTP42858 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC20.4■□□□□ 0.86
HTTP42858 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC20.4■□□□□ 0.86
HTTP42858 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HTTP42858 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC20.4■□□□□ 0.86
HTTP42858 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HTTP42858 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.4■□□□□ 0.86
HTTP42858 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HTTP42858 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
HTTP42858 MEIS3P1-201ENST00000495167 958 ntBASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms