Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
SCN4AP35499 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SCN4AP35499 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SCN4AP35499 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC21.47■■□□□ 1.03
SCN4AP35499 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SCN4AP35499 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.47■■□□□ 1.03
SCN4AP35499 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC21.47■■□□□ 1.03
SCN4AP35499 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC21.47■■□□□ 1.03
SCN4AP35499 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
SCN4AP35499 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SCN4AP35499 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SCN4AP35499 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SCN4AP35499 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.47■■□□□ 1.03
SCN4AP35499 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SCN4AP35499 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
SCN4AP35499 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC21.47■■□□□ 1.03
SCN4AP35499 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SCN4AP35499 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SCN4AP35499 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SCN4AP35499 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SCN4AP35499 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC21.46■■□□□ 1.03
SCN4AP35499 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SCN4AP35499 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC21.46■■□□□ 1.03
SCN4AP35499 CBR1-202ENST00000399191 838 ntTSL 3 BASIC21.46■■□□□ 1.03
SCN4AP35499 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC21.46■■□□□ 1.03
SCN4AP35499 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC21.46■■□□□ 1.03
SCN4AP35499 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SCN4AP35499 ARTN-206ENST00000472435 402 ntTSL 3 BASIC21.46■■□□□ 1.03
SCN4AP35499 RBM7-207ENST00000544582 692 ntTSL 3 BASIC21.46■■□□□ 1.03
SCN4AP35499 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SCN4AP35499 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.46■■□□□ 1.03
SCN4AP35499 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SCN4AP35499 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC21.46■■□□□ 1.03
SCN4AP35499 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.46■■□□□ 1.03
SCN4AP35499 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
SCN4AP35499 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC21.45■■□□□ 1.03
SCN4AP35499 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC21.45■■□□□ 1.03
SCN4AP35499 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC21.45■■□□□ 1.03
SCN4AP35499 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC21.45■■□□□ 1.03
SCN4AP35499 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
SCN4AP35499 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC21.45■■□□□ 1.02
SCN4AP35499 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SCN4AP35499 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
SCN4AP35499 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC21.45■■□□□ 1.02
SCN4AP35499 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC21.45■■□□□ 1.02
SCN4AP35499 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SCN4AP35499 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SCN4AP35499 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SCN4AP35499 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SCN4AP35499 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.45■■□□□ 1.02
SCN4AP35499 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SCN4AP35499 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
SCN4AP35499 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC21.45■■□□□ 1.02
SCN4AP35499 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC21.45■■□□□ 1.02
SCN4AP35499 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
SCN4AP35499 AC008667.4-201ENST00000607370 168 ntBASIC21.45■■□□□ 1.02
SCN4AP35499 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC21.45■■□□□ 1.02
SCN4AP35499 Z92544.3-201ENST00000624747 417 ntBASIC21.45■■□□□ 1.02
SCN4AP35499 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SCN4AP35499 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
SCN4AP35499 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SCN4AP35499 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.45■■□□□ 1.02
SCN4AP35499 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SCN4AP35499 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.44■■□□□ 1.02
SCN4AP35499 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.44■■□□□ 1.02
SCN4AP35499 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
SCN4AP35499 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SCN4AP35499 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SCN4AP35499 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SCN4AP35499 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SCN4AP35499 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
SCN4AP35499 COPE-202ENST00000349893 948 ntTSL 2 BASIC21.44■■□□□ 1.02
SCN4AP35499 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC21.44■■□□□ 1.02
SCN4AP35499 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SCN4AP35499 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
SCN4AP35499 AL589182.2-201ENST00000619332 1049 ntBASIC21.44■■□□□ 1.02
SCN4AP35499 AL035252.4-201ENST00000624174 288 ntBASIC21.44■■□□□ 1.02
SCN4AP35499 AC010507.1-201ENST00000633895 436 ntBASIC21.44■■□□□ 1.02
SCN4AP35499 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SCN4AP35499 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SCN4AP35499 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
SCN4AP35499 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SCN4AP35499 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
SCN4AP35499 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SCN4AP35499 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.44■■□□□ 1.02
SCN4AP35499 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SCN4AP35499 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.44■■□□□ 1.02
SCN4AP35499 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SCN4AP35499 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC21.43■■□□□ 1.02
SCN4AP35499 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.43■■□□□ 1.02
SCN4AP35499 AC006504.4-201ENST00000592118 1568 ntBASIC21.43■■□□□ 1.02
SCN4AP35499 CD99-202ENST00000381180 530 ntTSL 2 BASIC21.43■■□□□ 1.02
SCN4AP35499 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC21.43■■□□□ 1.02
SCN4AP35499 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC21.43■■□□□ 1.02
SCN4AP35499 RIN3-211ENST00000557762 517 ntTSL 3 BASIC21.43■■□□□ 1.02
SCN4AP35499 CITED2-204ENST00000618718 901 ntTSL 2 BASIC21.43■■□□□ 1.02
SCN4AP35499 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
SCN4AP35499 ADM-208ENST00000534464 1640 ntTSL 2 BASIC21.43■■□□□ 1.02
SCN4AP35499 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SCN4AP35499 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms