Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC3P19447 AL022342.1-201ENST00000400363 863 ntBASIC21.1■□□□□ 0.97
ERCC3P19447 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC21.1■□□□□ 0.97
ERCC3P19447 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC3P19447 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC21.1■□□□□ 0.97
ERCC3P19447 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
ERCC3P19447 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
ERCC3P19447 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
ERCC3P19447 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC3P19447 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC21.1■□□□□ 0.97
ERCC3P19447 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC3P19447 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.1■□□□□ 0.97
ERCC3P19447 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC3P19447 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC3P19447 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
ERCC3P19447 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
ERCC3P19447 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC3P19447 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC3P19447 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC3P19447 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC3P19447 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC21.09■□□□□ 0.97
ERCC3P19447 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC3P19447 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.09■□□□□ 0.97
ERCC3P19447 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC3P19447 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC3P19447 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
ERCC3P19447 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC3P19447 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC21.09■□□□□ 0.97
ERCC3P19447 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC3P19447 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC21.09■□□□□ 0.97
ERCC3P19447 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC3P19447 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
ERCC3P19447 MRPL3P1-201ENST00000400109 1033 ntBASIC21.09■□□□□ 0.97
ERCC3P19447 VENTXP7-201ENST00000475503 772 ntBASIC21.09■□□□□ 0.97
ERCC3P19447 ABR-217ENST00000572441 563 ntTSL 4 BASIC21.09■□□□□ 0.97
ERCC3P19447 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.09■□□□□ 0.97
ERCC3P19447 CCNC-219ENST00000627680 896 ntTSL 5 BASIC21.09■□□□□ 0.97
ERCC3P19447 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC3P19447 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC3P19447 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ERCC3P19447 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
ERCC3P19447 MTMR9LP-203ENST00000426597 1545 ntBASIC21.09■□□□□ 0.97
ERCC3P19447 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC21.08■□□□□ 0.97
ERCC3P19447 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC21.08■□□□□ 0.97
ERCC3P19447 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
ERCC3P19447 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ERCC3P19447 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
ERCC3P19447 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.97
ERCC3P19447 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.08■□□□□ 0.97
ERCC3P19447 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC21.08■□□□□ 0.97
ERCC3P19447 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC21.08■□□□□ 0.97
ERCC3P19447 AC079776.4-201ENST00000511039 504 ntBASIC21.08■□□□□ 0.97
ERCC3P19447 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.08■□□□□ 0.97
ERCC3P19447 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
ERCC3P19447 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
ERCC3P19447 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
ERCC3P19447 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
ERCC3P19447 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
ERCC3P19447 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.07■□□□□ 0.96
ERCC3P19447 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC21.07■□□□□ 0.96
ERCC3P19447 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 NUS1P2-201ENST00000417358 873 ntBASIC21.07■□□□□ 0.96
ERCC3P19447 CDV3-207ENST00000508481 661 ntTSL 3 BASIC21.07■□□□□ 0.96
ERCC3P19447 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 AL662844.1-201ENST00000546340 181 ntBASIC21.07■□□□□ 0.96
ERCC3P19447 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.07■□□□□ 0.96
ERCC3P19447 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
ERCC3P19447 VPS51-217ENST00000639871 243 ntTSL 5 BASIC21.07■□□□□ 0.96
ERCC3P19447 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC21.07■□□□□ 0.96
ERCC3P19447 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
ERCC3P19447 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ERCC3P19447 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
ERCC3P19447 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ERCC3P19447 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC21.06■□□□□ 0.96
ERCC3P19447 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ERCC3P19447 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
ERCC3P19447 AL163051.1-201ENST00000569214 1512 ntBASIC21.06■□□□□ 0.96
ERCC3P19447 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ERCC3P19447 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ERCC3P19447 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ERCC3P19447 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
ERCC3P19447 HES2-202ENST00000377836 507 ntTSL 2 BASIC21.06■□□□□ 0.96
ERCC3P19447 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ERCC3P19447 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ERCC3P19447 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms