Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 AL596257.1-201ENST00000641463 2694 ntBASIC17.25■□□□□ 0.35
CLPTM1O96005 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC17.25■□□□□ 0.35
CLPTM1O96005 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.25■□□□□ 0.35
CLPTM1O96005 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLPTM1O96005 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CLPTM1O96005 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CLPTM1O96005 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.25■□□□□ 0.35
CLPTM1O96005 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLPTM1O96005 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLPTM1O96005 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLPTM1O96005 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CLPTM1O96005 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC17.24■□□□□ 0.35
CLPTM1O96005 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC17.24■□□□□ 0.35
CLPTM1O96005 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CLPTM1O96005 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.24■□□□□ 0.35
CLPTM1O96005 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.24■□□□□ 0.35
CLPTM1O96005 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.24■□□□□ 0.35
CLPTM1O96005 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
CLPTM1O96005 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.24■□□□□ 0.35
CLPTM1O96005 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC17.24■□□□□ 0.35
CLPTM1O96005 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 AC006557.6-201ENST00000623071 864 ntBASIC17.24■□□□□ 0.35
CLPTM1O96005 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.24■□□□□ 0.35
CLPTM1O96005 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CLPTM1O96005 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CLPTM1O96005 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC17.24■□□□□ 0.35
CLPTM1O96005 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.24■□□□□ 0.35
CLPTM1O96005 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 AC018553.1-201ENST00000616682 1458 ntBASIC17.24■□□□□ 0.35
CLPTM1O96005 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CLPTM1O96005 AL513477.1-201ENST00000602865 2407 ntBASIC17.23■□□□□ 0.35
CLPTM1O96005 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.23■□□□□ 0.35
CLPTM1O96005 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
CLPTM1O96005 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC17.23■□□□□ 0.35
CLPTM1O96005 REXO1L9P-201ENST00000604264 2108 ntBASIC17.23■□□□□ 0.35
CLPTM1O96005 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
CLPTM1O96005 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 ABHD17AP1-201ENST00000358206 933 ntBASIC17.23■□□□□ 0.35
CLPTM1O96005 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 ESRRAP1-201ENST00000400596 1257 ntBASIC17.23■□□□□ 0.35
CLPTM1O96005 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.23■□□□□ 0.35
CLPTM1O96005 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC17.23■□□□□ 0.35
CLPTM1O96005 SOX15-203ENST00000570788 1093 ntBASIC17.23■□□□□ 0.35
CLPTM1O96005 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
CLPTM1O96005 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CLPTM1O96005 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CLPTM1O96005 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
CLPTM1O96005 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CLPTM1O96005 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CLPTM1O96005 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CLPTM1O96005 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC17.22■□□□□ 0.35
CLPTM1O96005 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLPTM1O96005 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
CLPTM1O96005 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CLPTM1O96005 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
CLPTM1O96005 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLPTM1O96005 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLPTM1O96005 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLPTM1O96005 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLPTM1O96005 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CLPTM1O96005 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.22■□□□□ 0.35
CLPTM1O96005 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CLPTM1O96005 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.22■□□□□ 0.35
CLPTM1O96005 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 22.4 ms