Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC15.29■□□□□ 0.04
ABCA1O95477 AL020996.1-203ENST00000536896 2307 ntBASIC15.29■□□□□ 0.04
ABCA1O95477 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
ABCA1O95477 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
ABCA1O95477 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
ABCA1O95477 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 TLE1-202ENST00000376484 666 ntTSL 3 BASIC15.28■□□□□ 0.04
ABCA1O95477 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 MIR1233-2-201ENST00000408138 82 ntBASIC15.28■□□□□ 0.04
ABCA1O95477 MIR1233-1-201ENST00000408722 82 ntBASIC15.28■□□□□ 0.04
ABCA1O95477 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC15.28■□□□□ 0.04
ABCA1O95477 FICD-205ENST00000552758 603 ntTSL 2 BASIC15.28■□□□□ 0.04
ABCA1O95477 AC005332.3-201ENST00000589904 676 ntBASIC15.28■□□□□ 0.04
ABCA1O95477 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
ABCA1O95477 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
ABCA1O95477 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
ABCA1O95477 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
ABCA1O95477 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.28■□□□□ 0.04
ABCA1O95477 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC15.28■□□□□ 0.04
ABCA1O95477 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC15.28■□□□□ 0.04
ABCA1O95477 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 PTGES2-AS1-201ENST00000443493 2100 ntBASIC15.28■□□□□ 0.04
ABCA1O95477 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC15.28■□□□□ 0.04
ABCA1O95477 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ABCA1O95477 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA1O95477 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC15.27■□□□□ 0.04
ABCA1O95477 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA1O95477 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA1O95477 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
ABCA1O95477 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA1O95477 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA1O95477 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA1O95477 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.27■□□□□ 0.04
ABCA1O95477 AC024563.2-201ENST00000603282 481 ntBASIC15.27■□□□□ 0.04
ABCA1O95477 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC15.27■□□□□ 0.04
ABCA1O95477 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA1O95477 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.04
ABCA1O95477 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC15.27■□□□□ 0.04
ABCA1O95477 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC15.27■□□□□ 0.04
ABCA1O95477 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
ABCA1O95477 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
ABCA1O95477 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA1O95477 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA1O95477 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC15.27■□□□□ 0.03
ABCA1O95477 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA1O95477 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA1O95477 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA1O95477 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA1O95477 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA1O95477 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC15.27■□□□□ 0.03
ABCA1O95477 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC15.27■□□□□ 0.03
ABCA1O95477 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA1O95477 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
ABCA1O95477 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA1O95477 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA1O95477 HMGN1P19-201ENST00000436976 333 ntBASIC15.27■□□□□ 0.03
ABCA1O95477 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA1O95477 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
ABCA1O95477 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.27■□□□□ 0.03
ABCA1O95477 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC15.27■□□□□ 0.03
ABCA1O95477 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
ABCA1O95477 AC008556.1-201ENST00000610908 2040 ntBASIC15.27■□□□□ 0.03
ABCA1O95477 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA1O95477 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
ABCA1O95477 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC15.26■□□□□ 0.03
ABCA1O95477 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
ABCA1O95477 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC15.26■□□□□ 0.03
ABCA1O95477 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC15.26■□□□□ 0.03
ABCA1O95477 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA1O95477 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA1O95477 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC15.26■□□□□ 0.03
ABCA1O95477 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC15.26■□□□□ 0.03
ABCA1O95477 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA1O95477 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA1O95477 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA1O95477 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.26■□□□□ 0.03
ABCA1O95477 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC15.26■□□□□ 0.03
ABCA1O95477 AC148477.8-201ENST00000624298 468 ntBASIC15.26■□□□□ 0.03
ABCA1O95477 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC15.26■□□□□ 0.03
ABCA1O95477 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
ABCA1O95477 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
ABCA1O95477 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms