Protein–RNA interactions for Protein: O60925

PFDN1, Prefoldin subunit 1, humanhuman

Predictions only

Length 122 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PFDN1O60925 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
PFDN1O60925 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PFDN1O60925 PVT1-219ENST00000523427 938 ntTSL 3 BASIC16.34■□□□□ 0.21
PFDN1O60925 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC16.34■□□□□ 0.21
PFDN1O60925 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PFDN1O60925 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PFDN1O60925 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PFDN1O60925 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PFDN1O60925 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PFDN1O60925 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PFDN1O60925 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
PFDN1O60925 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
PFDN1O60925 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
PFDN1O60925 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
PFDN1O60925 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.34■□□□□ 0.21
PFDN1O60925 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
PFDN1O60925 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC16.34■□□□□ 0.21
PFDN1O60925 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.33■□□□□ 0.21
PFDN1O60925 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
PFDN1O60925 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.33■□□□□ 0.21
PFDN1O60925 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PFDN1O60925 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.21
PFDN1O60925 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PFDN1O60925 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PFDN1O60925 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
PFDN1O60925 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
PFDN1O60925 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PFDN1O60925 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
PFDN1O60925 REXO1L9P-201ENST00000604264 2108 ntBASIC16.33■□□□□ 0.21
PFDN1O60925 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PFDN1O60925 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PFDN1O60925 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.33■□□□□ 0.2
PFDN1O60925 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PFDN1O60925 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PFDN1O60925 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC16.33■□□□□ 0.2
PFDN1O60925 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
PFDN1O60925 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
PFDN1O60925 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
PFDN1O60925 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PFDN1O60925 ANKRD18DP-204ENST00000455355 1975 ntBASIC16.33■□□□□ 0.2
PFDN1O60925 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
PFDN1O60925 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC16.33■□□□□ 0.2
PFDN1O60925 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
PFDN1O60925 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
PFDN1O60925 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PFDN1O60925 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
PFDN1O60925 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
PFDN1O60925 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC16.32■□□□□ 0.2
PFDN1O60925 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
PFDN1O60925 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
PFDN1O60925 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC16.32■□□□□ 0.2
PFDN1O60925 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC16.32■□□□□ 0.2
PFDN1O60925 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC16.32■□□□□ 0.2
PFDN1O60925 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.32■□□□□ 0.2
PFDN1O60925 pRNA.6-201ENST00000610482 90 ntBASIC16.32■□□□□ 0.2
PFDN1O60925 pRNA.5-201ENST00000612139 90 ntBASIC16.32■□□□□ 0.2
PFDN1O60925 pRNA.11-201ENST00000618423 90 ntBASIC16.32■□□□□ 0.2
PFDN1O60925 pRNA.13-201ENST00000619112 90 ntBASIC16.32■□□□□ 0.2
PFDN1O60925 AC241377.3-202ENST00000626088 1088 ntBASIC16.32■□□□□ 0.2
PFDN1O60925 AC241585.3-202ENST00000628937 1088 ntBASIC16.32■□□□□ 0.2
PFDN1O60925 AC245100.8-202ENST00000629247 1058 ntBASIC16.32■□□□□ 0.2
PFDN1O60925 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC16.32■□□□□ 0.2
PFDN1O60925 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
PFDN1O60925 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
PFDN1O60925 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PFDN1O60925 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PFDN1O60925 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PFDN1O60925 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PFDN1O60925 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
PFDN1O60925 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.31■□□□□ 0.2
PFDN1O60925 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PFDN1O60925 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
PFDN1O60925 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
PFDN1O60925 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PFDN1O60925 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
PFDN1O60925 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
PFDN1O60925 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms