Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
CACNA1AO00555 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CACNA1AO00555 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CACNA1AO00555 AC092933.1-201ENST00000393644 945 ntBASIC17.07■□□□□ 0.32
CACNA1AO00555 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.07■□□□□ 0.32
CACNA1AO00555 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CACNA1AO00555 AC017083.2-201ENST00000608069 979 ntBASIC17.07■□□□□ 0.32
CACNA1AO00555 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC17.07■□□□□ 0.32
CACNA1AO00555 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CACNA1AO00555 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
CACNA1AO00555 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
CACNA1AO00555 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CACNA1AO00555 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CACNA1AO00555 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CACNA1AO00555 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
CACNA1AO00555 AC003101.2-201ENST00000612557 442 ntBASIC17.06■□□□□ 0.32
CACNA1AO00555 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC17.06■□□□□ 0.32
CACNA1AO00555 AC009102.3-201ENST00000623118 1491 ntBASIC17.06■□□□□ 0.32
CACNA1AO00555 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.06■□□□□ 0.32
CACNA1AO00555 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
CACNA1AO00555 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CACNA1AO00555 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC17.06■□□□□ 0.32
CACNA1AO00555 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC17.06■□□□□ 0.32
CACNA1AO00555 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC17.06■□□□□ 0.32
CACNA1AO00555 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
CACNA1AO00555 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CACNA1AO00555 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
CACNA1AO00555 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC17.06■□□□□ 0.32
CACNA1AO00555 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
CACNA1AO00555 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.05■□□□□ 0.32
CACNA1AO00555 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CACNA1AO00555 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CACNA1AO00555 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
CACNA1AO00555 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CACNA1AO00555 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.05■□□□□ 0.32
CACNA1AO00555 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CACNA1AO00555 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CACNA1AO00555 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.05■□□□□ 0.32
CACNA1AO00555 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.05■□□□□ 0.32
CACNA1AO00555 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC17.05■□□□□ 0.32
CACNA1AO00555 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CACNA1AO00555 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
CACNA1AO00555 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
CACNA1AO00555 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC17.05■□□□□ 0.32
CACNA1AO00555 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
CACNA1AO00555 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.05■□□□□ 0.32
CACNA1AO00555 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.05■□□□□ 0.32
CACNA1AO00555 SNX1-214ENST00000625244 324 ntTSL 5 BASIC17.05■□□□□ 0.32
CACNA1AO00555 AC025580.3-201ENST00000617932 1424 ntBASIC17.05■□□□□ 0.32
CACNA1AO00555 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.05■□□□□ 0.32
CACNA1AO00555 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CACNA1AO00555 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CACNA1AO00555 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CACNA1AO00555 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CACNA1AO00555 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC17.04■□□□□ 0.32
CACNA1AO00555 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.04■□□□□ 0.32
CACNA1AO00555 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.04■□□□□ 0.32
CACNA1AO00555 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.04■□□□□ 0.32
CACNA1AO00555 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
CACNA1AO00555 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC17.04■□□□□ 0.32
CACNA1AO00555 KRT8P50-201ENST00000562022 1438 ntBASIC17.04■□□□□ 0.32
CACNA1AO00555 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.04■□□□□ 0.32
CACNA1AO00555 KRT18P32-201ENST00000424695 1287 ntBASIC17.04■□□□□ 0.32
CACNA1AO00555 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CACNA1AO00555 AC069335.1-201ENST00000489972 472 ntBASIC17.04■□□□□ 0.32
CACNA1AO00555 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.04■□□□□ 0.32
CACNA1AO00555 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.04■□□□□ 0.32
CACNA1AO00555 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC17.04■□□□□ 0.32
CACNA1AO00555 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.04■□□□□ 0.32
CACNA1AO00555 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.04■□□□□ 0.32
CACNA1AO00555 NAT9-224ENST00000583757 583 ntTSL 3 BASIC17.04■□□□□ 0.32
CACNA1AO00555 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC17.04■□□□□ 0.32
CACNA1AO00555 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.04■□□□□ 0.32
CACNA1AO00555 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.04■□□□□ 0.32
CACNA1AO00555 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
CACNA1AO00555 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CACNA1AO00555 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CACNA1AO00555 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CACNA1AO00555 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CACNA1AO00555 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
CACNA1AO00555 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.03■□□□□ 0.32
CACNA1AO00555 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC17.03■□□□□ 0.32
CACNA1AO00555 AC074386.1-202ENST00000463561 864 ntBASIC17.03■□□□□ 0.32
CACNA1AO00555 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.03■□□□□ 0.32
CACNA1AO00555 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC17.03■□□□□ 0.32
CACNA1AO00555 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CACNA1AO00555 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CACNA1AO00555 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CACNA1AO00555 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
CACNA1AO00555 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CACNA1AO00555 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CACNA1AO00555 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CACNA1AO00555 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CACNA1AO00555 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC17.03■□□□□ 0.32
CACNA1AO00555 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
CACNA1AO00555 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
CACNA1AO00555 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CACNA1AO00555 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.03■□□□□ 0.32
CACNA1AO00555 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
CACNA1AO00555 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms