Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
TRIM49D1C9J1S8 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 AC096733.2-201ENST00000609937 1394 ntBASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 AC006116.8-202ENST00000587620 1550 ntBASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 RPPH1-201ENST00000516869 333 ntBASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.31■□□□□ 0.52
TRIM49D1C9J1S8 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 SP100-208ENST00000427101 1922 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 SIRPAP1-201ENST00000448467 1770 ntBASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
TRIM49D1C9J1S8 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 AL163051.1-201ENST00000569214 1512 ntBASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 AC009102.3-201ENST00000623118 1491 ntBASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 FAM197Y1-201ENST00000421178 764 ntBASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 MFAP1P1-201ENST00000442257 1255 ntBASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 SLC25A1P4-201ENST00000567977 778 ntBASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 PRORSD1P-202ENST00000563365 2154 ntBASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM49D1C9J1S8 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM49D1C9J1S8 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.28■□□□□ 0.52
TRIM49D1C9J1S8 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM49D1C9J1S8 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC18.28■□□□□ 0.52
TRIM49D1C9J1S8 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 67.4 ms