Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
TRAV40A0A0B4J280 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 AC026396.1-201ENST00000419388 421 ntBASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 AC099336.1-202ENST00000602961 463 ntBASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 AL121772.3-201ENST00000610840 674 ntBASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
TRAV40A0A0B4J280 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 HES2-202ENST00000377836 507 ntTSL 2 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 LINC01711-201ENST00000598340 967 ntBASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 AC018445.3-201ENST00000624177 1945 ntBASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC14.85□□□□□ -0.03
TRAV40A0A0B4J280 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 DDT-203ENST00000403754 569 ntTSL 3 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 DDT-206ENST00000430101 573 ntTSL 2 BASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 KRT17P6-201ENST00000453795 1220 ntBASIC14.84□□□□□ -0.03
TRAV40A0A0B4J280 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms