Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
PCDHA3Q9Y5H8 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHA3Q9Y5H8 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHA3Q9Y5H8 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
PCDHA3Q9Y5H8 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 AC006116.8-202ENST00000587620 1550 ntBASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 EML3-212ENST00000494176 2901 ntTSL 2 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 EML3-216ENST00000529309 2909 ntTSL 2 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 AC104390.1-201ENST00000555663 520 ntBASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC19.1■□□□□ 0.65
PCDHA3Q9Y5H8 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 CCR12P-201ENST00000446203 998 ntBASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 BX088651.1-201ENST00000540551 451 ntBASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 FITM1-202ENST00000559294 800 ntBASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 MIR3180-4-201ENST00000582223 153 ntBASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 KRT18P55-202ENST00000578578 1546 ntBASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
PCDHA3Q9Y5H8 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHA3Q9Y5H8 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.08■□□□□ 0.65
PCDHA3Q9Y5H8 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHA3Q9Y5H8 AC012317.2-201ENST00000623305 2251 ntBASIC19.08■□□□□ 0.65
PCDHA3Q9Y5H8 FST-202ENST00000396947 2538 ntTSL 5 BASIC19.08■□□□□ 0.65
PCDHA3Q9Y5H8 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHA3Q9Y5H8 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHA3Q9Y5H8 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC19.08■□□□□ 0.65
PCDHA3Q9Y5H8 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PCDHA3Q9Y5H8 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 AC139713.2-201ENST00000641328 2723 ntBASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC19.08■□□□□ 0.64
PCDHA3Q9Y5H8 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 AL024508.2-201ENST00000607749 1894 ntBASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PCDHA3Q9Y5H8 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms