Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TRIM39Q9HCM9 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 AL138781.2-201ENST00000617896 1843 ntBASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 AL162741.1-201ENST00000565563 1558 ntBASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 AC099343.3-201ENST00000605834 2503 ntBASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 HCG11-201ENST00000411553 5696 ntBASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 AC005082.1-201ENST00000413042 2259 ntBASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
TRIM39Q9HCM9 AC020763.4-201ENST00000623414 4170 ntBASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 FXN-203ENST00000396366 922 ntTSL 2 BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 KRT18P48-201ENST00000434763 852 ntBASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
TRIM39Q9HCM9 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
TRIM39Q9HCM9 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC18.08■□□□□ 0.49
TRIM39Q9HCM9 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM39Q9HCM9 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.08■□□□□ 0.49
TRIM39Q9HCM9 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM39Q9HCM9 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM39Q9HCM9 KRT89P-201ENST00000620027 1478 ntBASIC18.08■□□□□ 0.49
TRIM39Q9HCM9 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM39Q9HCM9 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
TRIM39Q9HCM9 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM39Q9HCM9 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
TRIM39Q9HCM9 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 COPS8-203ENST00000409334 794 ntTSL 5 BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 AP003733.1-201ENST00000491725 852 ntBASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 AC008687.5-201ENST00000593746 558 ntBASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 WIZP1-201ENST00000531444 2299 ntBASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
TRIM39Q9HCM9 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms