Protein–RNA interactions for Protein: Q9C0I3

CCSER1, Serine-rich coiled-coil domain-containing protein 1, humanhuman

Predictions only

Length 900 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCSER1Q9C0I3 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCSER1Q9C0I3 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CCSER1Q9C0I3 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
CCSER1Q9C0I3 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCSER1Q9C0I3 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCSER1Q9C0I3 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CCSER1Q9C0I3 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
CCSER1Q9C0I3 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 AC068880.1-201ENST00000507289 2297 ntBASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 USF2-205ENST00000594064 1179 ntTSL 2 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCSER1Q9C0I3 AC018470.1-201ENST00000624790 3129 ntBASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 AL133373.2-201ENST00000623187 2828 ntBASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCSER1Q9C0I3 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 AP000997.3-201ENST00000623333 2250 ntBASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 SPDYE15P-201ENST00000424157 909 ntBASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 DUTP2-201ENST00000519164 463 ntBASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CCSER1Q9C0I3 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 AC132938.6-201ENST00000623828 1655 ntBASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 AL391807.1-203ENST00000604392 2365 ntBASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 AC113404.2-201ENST00000507884 177 ntBASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 AC006011.2-201ENST00000621313 1158 ntBASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC20.42■□□□□ 0.86
CCSER1Q9C0I3 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms