Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 MAX-217ENST00000557277 728 ntTSL 3 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 MYC-208ENST00000641036 567 ntBASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
ZNF540Q8NDQ6 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.96■□□□□ 0.3
ZNF540Q8NDQ6 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.96■□□□□ 0.3
ZNF540Q8NDQ6 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
ZNF540Q8NDQ6 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC16.96■□□□□ 0.3
ZNF540Q8NDQ6 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
ZNF540Q8NDQ6 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 TNRC18P3-201ENST00000441896 2691 ntBASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 AC012618.2-201ENST00000428058 849 ntBASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 THEM4-205ENST00000489410 643 ntTSL 2 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 LY6E-205ENST00000519611 635 ntTSL 3 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 AC233263.1-201ENST00000578059 224 ntBASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 AC110285.5-201ENST00000611501 352 ntBASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 AC108860.2-201ENST00000562760 2183 ntBASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 KRT17P2-201ENST00000300992 1314 ntBASIC16.95■□□□□ 0.3
ZNF540Q8NDQ6 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 AC006557.6-201ENST00000623071 864 ntBASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 NFYC-AS1-201ENST00000606277 1687 ntBASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ZNF540Q8NDQ6 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms