Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 AL356309.3-201ENST00000624132 1934 ntBASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.68■□□□□ 0.58
SLC44A3Q8N4M1 GLB1-202ENST00000307377 2018 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 AC009102.3-201ENST00000623118 1491 ntBASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 HNRNPA1P28-201ENST00000424481 961 ntBASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 PMS2P2-201ENST00000425039 1128 ntBASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 GPX1P2-201ENST00000429271 606 ntBASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 AC009154.2-201ENST00000621177 724 ntBASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.67■□□□□ 0.58
SLC44A3Q8N4M1 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 YBX2P1-201ENST00000394192 760 ntBASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 RPS8P6-201ENST00000426177 609 ntBASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 MIR3687-2-201ENST00000577708 61 ntBASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 MIR3687-1-201ENST00000614492 61 ntBASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SLC44A3Q8N4M1 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 DHDH-204ENST00000523250 634 ntTSL 5 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 AC025062.2-201ENST00000605477 670 ntBASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.65■□□□□ 0.58
SLC44A3Q8N4M1 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms