Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 HEIH-201ENST00000623091 1652 ntBASIC12.68□□□□□ -0.38
CSMD3Q7Z407 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
CSMD3Q7Z407 CENPM-204ENST00000402420 688 ntTSL 5 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 COX20P2-201ENST00000452636 358 ntBASIC12.67□□□□□ -0.38
CSMD3Q7Z407 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 AC002310.6-201ENST00000624451 1377 ntBASIC12.67□□□□□ -0.38
CSMD3Q7Z407 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 DANCR-204ENST00000444958 709 ntTSL 3 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 ABCD1P5-201ENST00000445663 754 ntBASIC12.67□□□□□ -0.38
CSMD3Q7Z407 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 AC092910.1-201ENST00000482027 1129 ntBASIC12.67□□□□□ -0.38
CSMD3Q7Z407 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 AL139288.1-201ENST00000623748 933 ntBASIC12.67□□□□□ -0.38
CSMD3Q7Z407 AC073592.4-201ENST00000623827 446 ntBASIC12.67□□□□□ -0.38
CSMD3Q7Z407 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC12.67□□□□□ -0.38
CSMD3Q7Z407 SDHAP2-201ENST00000455183 2001 ntBASIC12.67□□□□□ -0.38
CSMD3Q7Z407 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 CFL1-202ENST00000524553 860 ntTSL 2 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 AC107918.4-202ENST00000641623 219 ntBASIC12.66□□□□□ -0.38
CSMD3Q7Z407 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 AL645939.2-201ENST00000427340 991 ntBASIC12.66□□□□□ -0.38
CSMD3Q7Z407 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 KRT18P2-201ENST00000447938 1258 ntBASIC12.66□□□□□ -0.38
CSMD3Q7Z407 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 AC027612.4-201ENST00000605371 583 ntBASIC12.66□□□□□ -0.38
CSMD3Q7Z407 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 POLI-202ENST00000406285 2030 ntTSL 2 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 CTNS-203ENST00000399306 803 ntTSL 3 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 RAB17-203ENST00000409576 466 ntTSL 3 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC12.66□□□□□ -0.38
CSMD3Q7Z407 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC12.65□□□□□ -0.38
CSMD3Q7Z407 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC12.65□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms