Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
USP41Q3LFD5 PTGES2-AS1-201ENST00000443493 2100 ntBASIC19.42■□□□□ 0.7
USP41Q3LFD5 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.42■□□□□ 0.7
USP41Q3LFD5 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP41Q3LFD5 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.41■□□□□ 0.7
USP41Q3LFD5 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP41Q3LFD5 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP41Q3LFD5 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP41Q3LFD5 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
USP41Q3LFD5 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.41■□□□□ 0.7
USP41Q3LFD5 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP41Q3LFD5 AKR1C7P-201ENST00000305623 895 ntBASIC19.41■□□□□ 0.7
USP41Q3LFD5 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.41■□□□□ 0.7
USP41Q3LFD5 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.41■□□□□ 0.7
USP41Q3LFD5 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC19.41■□□□□ 0.7
USP41Q3LFD5 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.41■□□□□ 0.7
USP41Q3LFD5 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP41Q3LFD5 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.41■□□□□ 0.7
USP41Q3LFD5 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP41Q3LFD5 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USP41Q3LFD5 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USP41Q3LFD5 AC099343.3-201ENST00000605834 2503 ntBASIC19.41■□□□□ 0.7
USP41Q3LFD5 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 AC116562.4-201ENST00000641316 2276 ntBASIC19.4■□□□□ 0.7
USP41Q3LFD5 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 SLC25A6P4-201ENST00000586535 553 ntBASIC19.4■□□□□ 0.7
USP41Q3LFD5 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 BNIP3P18-201ENST00000593976 575 ntBASIC19.4■□□□□ 0.7
USP41Q3LFD5 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 COBL-210ENST00000632460 1941 ntTSL 5 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.4■□□□□ 0.7
USP41Q3LFD5 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USP41Q3LFD5 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP41Q3LFD5 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP41Q3LFD5 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
USP41Q3LFD5 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.39■□□□□ 0.7
USP41Q3LFD5 AL024508.2-201ENST00000607749 1894 ntBASIC19.39■□□□□ 0.7
USP41Q3LFD5 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USP41Q3LFD5 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
USP41Q3LFD5 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP41Q3LFD5 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP41Q3LFD5 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
USP41Q3LFD5 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.39■□□□□ 0.69
USP41Q3LFD5 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.39■□□□□ 0.69
USP41Q3LFD5 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.39■□□□□ 0.69
USP41Q3LFD5 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC19.39■□□□□ 0.69
USP41Q3LFD5 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP41Q3LFD5 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC19.39■□□□□ 0.69
USP41Q3LFD5 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.39■□□□□ 0.69
USP41Q3LFD5 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP41Q3LFD5 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
USP41Q3LFD5 VPS51-217ENST00000639871 243 ntTSL 5 BASIC19.39■□□□□ 0.69
USP41Q3LFD5 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP41Q3LFD5 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC19.39■□□□□ 0.69
USP41Q3LFD5 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
USP41Q3LFD5 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP41Q3LFD5 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP41Q3LFD5 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP41Q3LFD5 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USP41Q3LFD5 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
USP41Q3LFD5 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.39■□□□□ 0.69
USP41Q3LFD5 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP41Q3LFD5 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USP41Q3LFD5 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP41Q3LFD5 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP41Q3LFD5 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP41Q3LFD5 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP41Q3LFD5 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP41Q3LFD5 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP41Q3LFD5 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USP41Q3LFD5 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP41Q3LFD5 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.38■□□□□ 0.69
USP41Q3LFD5 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP41Q3LFD5 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USP41Q3LFD5 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms