Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
COL7A1Q02388 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 HEIH-201ENST00000623091 1652 ntBASIC13.03□□□□□ -0.32
COL7A1Q02388 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL7A1Q02388 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL7A1Q02388 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL7A1Q02388 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.02□□□□□ -0.32
COL7A1Q02388 SDCCAG3P1-201ENST00000589292 1150 ntBASIC13.02□□□□□ -0.32
COL7A1Q02388 AL513190.1-201ENST00000621254 727 ntBASIC13.02□□□□□ -0.32
COL7A1Q02388 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC13.02□□□□□ -0.32
COL7A1Q02388 GABARAPL3-202ENST00000624044 1851 ntBASIC13.02□□□□□ -0.32
COL7A1Q02388 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL7A1Q02388 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL7A1Q02388 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC13.02□□□□□ -0.32
COL7A1Q02388 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC13.02□□□□□ -0.32
COL7A1Q02388 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL7A1Q02388 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC13.02□□□□□ -0.32
COL7A1Q02388 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC13.02□□□□□ -0.33
COL7A1Q02388 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC13.02□□□□□ -0.33
COL7A1Q02388 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 TSEN15P1-201ENST00000423257 515 ntBASIC13.02□□□□□ -0.33
COL7A1Q02388 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC13.02□□□□□ -0.33
COL7A1Q02388 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC13.02□□□□□ -0.33
COL7A1Q02388 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC13.02□□□□□ -0.33
COL7A1Q02388 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC13.02□□□□□ -0.33
COL7A1Q02388 AL024508.2-201ENST00000607749 1894 ntBASIC13.02□□□□□ -0.33
COL7A1Q02388 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC13.02□□□□□ -0.33
COL7A1Q02388 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 DANCR-204ENST00000444958 709 ntTSL 3 BASIC13.02□□□□□ -0.33
COL7A1Q02388 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 MSRA-206ENST00000521209 814 ntTSL 3 BASIC13.02□□□□□ -0.33
COL7A1Q02388 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 AL031432.2-201ENST00000566714 459 ntBASIC13.02□□□□□ -0.33
COL7A1Q02388 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.02□□□□□ -0.33
COL7A1Q02388 AL928711.1-201ENST00000570165 459 ntBASIC13.02□□□□□ -0.33
COL7A1Q02388 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 AC097374.2-201ENST00000618617 1306 ntBASIC13.02□□□□□ -0.33
COL7A1Q02388 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
COL7A1Q02388 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC13.02□□□□□ -0.33
COL7A1Q02388 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC13.02□□□□□ -0.33
COL7A1Q02388 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
COL7A1Q02388 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC13.01□□□□□ -0.33
COL7A1Q02388 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC13.01□□□□□ -0.33
COL7A1Q02388 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
COL7A1Q02388 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC13.01□□□□□ -0.33
COL7A1Q02388 SIGLEC16-201ENST00000599858 1437 ntBASIC13.01□□□□□ -0.33
COL7A1Q02388 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
COL7A1Q02388 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC13.01□□□□□ -0.33
COL7A1Q02388 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC13.01□□□□□ -0.33
COL7A1Q02388 PRSS29P-201ENST00000440800 595 ntBASIC13.01□□□□□ -0.33
COL7A1Q02388 AP000344.2-201ENST00000512987 629 ntBASIC13.01□□□□□ -0.33
COL7A1Q02388 PUDP-206ENST00000540122 825 ntTSL 2 BASIC13.01□□□□□ -0.33
COL7A1Q02388 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.01□□□□□ -0.33
COL7A1Q02388 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC13.01□□□□□ -0.33
COL7A1Q02388 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
COL7A1Q02388 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
COL7A1Q02388 UBQLN4P1-201ENST00000461599 1801 ntBASIC13.01□□□□□ -0.33
COL7A1Q02388 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC13.01□□□□□ -0.33
COL7A1Q02388 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
COL7A1Q02388 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC13□□□□□ -0.33
COL7A1Q02388 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
COL7A1Q02388 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
COL7A1Q02388 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC13□□□□□ -0.33
COL7A1Q02388 AC006504.4-201ENST00000592118 1568 ntBASIC13□□□□□ -0.33
COL7A1Q02388 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
COL7A1Q02388 METTL26-204ENST00000397665 558 ntTSL 2 BASIC13□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms