Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 AC011498.5-201ENST00000592027 486 ntBASIC20.12■□□□□ 0.81
PEX3P56589 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
PEX3P56589 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
PEX3P56589 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
PEX3P56589 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
PEX3P56589 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
PEX3P56589 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC20.12■□□□□ 0.81
PEX3P56589 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.12■□□□□ 0.81
PEX3P56589 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.12■□□□□ 0.81
PEX3P56589 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
PEX3P56589 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 NARF-204ENST00000390006 1766 ntTSL 2 BASIC20.11■□□□□ 0.81
PEX3P56589 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
PEX3P56589 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
PEX3P56589 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
PEX3P56589 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC20.11■□□□□ 0.81
PEX3P56589 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC20.11■□□□□ 0.81
PEX3P56589 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC20.11■□□□□ 0.81
PEX3P56589 COPS8-203ENST00000409334 794 ntTSL 5 BASIC20.11■□□□□ 0.81
PEX3P56589 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.11■□□□□ 0.81
PEX3P56589 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 AC005332.3-201ENST00000589904 676 ntBASIC20.11■□□□□ 0.81
PEX3P56589 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC20.11■□□□□ 0.81
PEX3P56589 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
PEX3P56589 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC20.11■□□□□ 0.81
PEX3P56589 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
PEX3P56589 KRT89P-201ENST00000620027 1478 ntBASIC20.11■□□□□ 0.81
PEX3P56589 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.11■□□□□ 0.81
PEX3P56589 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.11■□□□□ 0.81
PEX3P56589 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
PEX3P56589 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 Z83836.1-201ENST00000624605 1642 ntBASIC20.1■□□□□ 0.81
PEX3P56589 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
PEX3P56589 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC20.1■□□□□ 0.81
PEX3P56589 IGHGP-201ENST00000390555 1178 ntBASIC20.1■□□□□ 0.81
PEX3P56589 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
PEX3P56589 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.1■□□□□ 0.81
PEX3P56589 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC20.1■□□□□ 0.81
PEX3P56589 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PEX3P56589 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.1■□□□□ 0.81
PEX3P56589 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC20.1■□□□□ 0.81
PEX3P56589 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
PEX3P56589 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
PEX3P56589 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.1■□□□□ 0.81
PEX3P56589 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 AC135776.1-201ENST00000319817 2481 ntBASIC20.1■□□□□ 0.81
PEX3P56589 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
PEX3P56589 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PEX3P56589 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PEX3P56589 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.09■□□□□ 0.81
PEX3P56589 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PEX3P56589 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PEX3P56589 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.09■□□□□ 0.81
PEX3P56589 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PEX3P56589 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PEX3P56589 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PEX3P56589 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PEX3P56589 PPOX-214ENST00000535223 664 ntTSL 3 BASIC20.09■□□□□ 0.81
PEX3P56589 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC20.09■□□□□ 0.81
PEX3P56589 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC20.09■□□□□ 0.81
PEX3P56589 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
PEX3P56589 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms