Protein–RNA interactions for Protein: P53621

COPA, Coatomer subunit alpha, humanhuman

Predictions only

Length 1,224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPAP53621 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
COPAP53621 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.86■□□□□ 0.61
COPAP53621 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COPAP53621 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COPAP53621 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC18.86■□□□□ 0.61
COPAP53621 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COPAP53621 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COPAP53621 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.86■□□□□ 0.61
COPAP53621 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COPAP53621 AC141586.3-201ENST00000562166 1838 ntBASIC18.86■□□□□ 0.61
COPAP53621 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
COPAP53621 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC18.86■□□□□ 0.61
COPAP53621 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COPAP53621 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COPAP53621 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COPAP53621 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COPAP53621 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
COPAP53621 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.85■□□□□ 0.61
COPAP53621 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COPAP53621 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
COPAP53621 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.85■□□□□ 0.61
COPAP53621 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COPAP53621 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.85■□□□□ 0.61
COPAP53621 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
COPAP53621 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
COPAP53621 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
COPAP53621 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.85■□□□□ 0.61
COPAP53621 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COPAP53621 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.85■□□□□ 0.61
COPAP53621 HLA-F-220ENST00000434407 884 ntBASIC18.85■□□□□ 0.61
COPAP53621 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
COPAP53621 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.85■□□□□ 0.61
COPAP53621 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.85■□□□□ 0.61
COPAP53621 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.85■□□□□ 0.61
COPAP53621 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COPAP53621 IRX1P1-201ENST00000438849 1838 ntBASIC18.85■□□□□ 0.61
COPAP53621 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
COPAP53621 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.85■□□□□ 0.61
COPAP53621 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.85■□□□□ 0.61
COPAP53621 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COPAP53621 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.84■□□□□ 0.61
COPAP53621 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COPAP53621 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.84■□□□□ 0.61
COPAP53621 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
COPAP53621 PCDHB18P-201ENST00000524813 2368 ntBASIC18.84■□□□□ 0.61
COPAP53621 AL133373.2-201ENST00000623187 2828 ntBASIC18.84■□□□□ 0.61
COPAP53621 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.84■□□□□ 0.61
COPAP53621 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.84■□□□□ 0.61
COPAP53621 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.84■□□□□ 0.61
COPAP53621 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 LTB4R2-202ENST00000528054 3092 ntBASIC18.84■□□□□ 0.61
COPAP53621 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 AL450487.1-201ENST00000426799 995 ntBASIC18.84■□□□□ 0.61
COPAP53621 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC18.84■□□□□ 0.61
COPAP53621 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.84■□□□□ 0.61
COPAP53621 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.84■□□□□ 0.61
COPAP53621 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 AC011498.5-201ENST00000592027 486 ntBASIC18.84■□□□□ 0.61
COPAP53621 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.84■□□□□ 0.61
COPAP53621 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
COPAP53621 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC18.84■□□□□ 0.61
COPAP53621 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COPAP53621 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.84■□□□□ 0.61
COPAP53621 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.84■□□□□ 0.61
COPAP53621 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
COPAP53621 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COPAP53621 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
COPAP53621 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COPAP53621 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COPAP53621 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COPAP53621 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COPAP53621 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COPAP53621 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COPAP53621 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.83■□□□□ 0.61
COPAP53621 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
COPAP53621 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
COPAP53621 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
COPAP53621 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.83■□□□□ 0.6
COPAP53621 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.83■□□□□ 0.6
COPAP53621 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COPAP53621 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COPAP53621 KRT18P23-201ENST00000435622 1283 ntBASIC18.83■□□□□ 0.6
COPAP53621 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC18.83■□□□□ 0.6
COPAP53621 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC18.83■□□□□ 0.6
COPAP53621 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COPAP53621 AC092119.3-201ENST00000612618 583 ntBASIC18.83■□□□□ 0.6
COPAP53621 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.83■□□□□ 0.6
COPAP53621 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.83■□□□□ 0.6
COPAP53621 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms