Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CTCFP49711 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTCFP49711 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CTCFP49711 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTCFP49711 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC21.11■□□□□ 0.97
CTCFP49711 CCDC74BP1-201ENST00000508880 1123 ntBASIC21.11■□□□□ 0.97
CTCFP49711 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC21.11■□□□□ 0.97
CTCFP49711 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC21.11■□□□□ 0.97
CTCFP49711 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.11■□□□□ 0.97
CTCFP49711 REEP1-209ENST00000541910 969 ntTSL 2 BASIC21.11■□□□□ 0.97
CTCFP49711 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
CTCFP49711 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.11■□□□□ 0.97
CTCFP49711 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CTCFP49711 DUT-210ENST00000559935 569 ntTSL 3 BASIC21.11■□□□□ 0.97
CTCFP49711 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC21.11■□□□□ 0.97
CTCFP49711 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC21.11■□□□□ 0.97
CTCFP49711 ANKRD20A8P-203ENST00000641373 517 ntBASIC21.11■□□□□ 0.97
CTCFP49711 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTCFP49711 PCDHAC2-203ENST00000615316 3011 ntBASIC21.11■□□□□ 0.97
CTCFP49711 HEIH-201ENST00000623091 1652 ntBASIC21.11■□□□□ 0.97
CTCFP49711 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTCFP49711 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CTCFP49711 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC21.11■□□□□ 0.97
CTCFP49711 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.11■□□□□ 0.97
CTCFP49711 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTCFP49711 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTCFP49711 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CTCFP49711 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTCFP49711 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
CTCFP49711 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.1■□□□□ 0.97
CTCFP49711 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CTCFP49711 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.1■□□□□ 0.97
CTCFP49711 AC108751.1-201ENST00000490852 363 ntBASIC21.1■□□□□ 0.97
CTCFP49711 RNA5SP421-201ENST00000516864 134 ntBASIC21.1■□□□□ 0.97
CTCFP49711 RPL28-205ENST00000558131 444 ntTSL 5 BASIC21.1■□□□□ 0.97
CTCFP49711 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC21.1■□□□□ 0.97
CTCFP49711 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC21.1■□□□□ 0.97
CTCFP49711 MIR6752-201ENST00000618442 71 ntBASIC21.1■□□□□ 0.97
CTCFP49711 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC21.1■□□□□ 0.97
CTCFP49711 AC005593.1-201ENST00000624894 515 ntBASIC21.1■□□□□ 0.97
CTCFP49711 PGM5P2-202ENST00000637225 1043 ntBASIC21.1■□□□□ 0.97
CTCFP49711 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTCFP49711 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTCFP49711 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.1■□□□□ 0.97
CTCFP49711 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTCFP49711 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTCFP49711 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTCFP49711 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CTCFP49711 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CTCFP49711 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC21.09■□□□□ 0.97
CTCFP49711 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC21.09■□□□□ 0.97
CTCFP49711 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTCFP49711 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC21.09■□□□□ 0.97
CTCFP49711 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.09■□□□□ 0.97
CTCFP49711 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTCFP49711 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTCFP49711 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
CTCFP49711 PMS2P4-201ENST00000412466 1052 ntBASIC21.09■□□□□ 0.97
CTCFP49711 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC21.09■□□□□ 0.97
CTCFP49711 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC21.09■□□□□ 0.97
CTCFP49711 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CTCFP49711 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC21.09■□□□□ 0.97
CTCFP49711 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
CTCFP49711 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21.09■□□□□ 0.97
CTCFP49711 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
CTCFP49711 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CTCFP49711 AL512408.1-201ENST00000569378 2000 ntBASIC21.09■□□□□ 0.97
CTCFP49711 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTCFP49711 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTCFP49711 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC21.08■□□□□ 0.97
CTCFP49711 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
CTCFP49711 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
CTCFP49711 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTCFP49711 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CTCFP49711 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC21.08■□□□□ 0.97
CTCFP49711 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.08■□□□□ 0.97
CTCFP49711 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC21.08■□□□□ 0.97
CTCFP49711 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC21.08■□□□□ 0.97
CTCFP49711 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
CTCFP49711 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC21.08■□□□□ 0.97
CTCFP49711 NKAPP1-205ENST00000585790 367 ntBASIC21.08■□□□□ 0.97
CTCFP49711 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTCFP49711 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CTCFP49711 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTCFP49711 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTCFP49711 SMG8-203ENST00000578922 2178 ntBASIC21.07■□□□□ 0.96
CTCFP49711 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTCFP49711 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTCFP49711 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC21.07■□□□□ 0.96
CTCFP49711 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CTCFP49711 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTCFP49711 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CTCFP49711 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTCFP49711 OR8S1-201ENST00000310194 1080 ntBASIC21.07■□□□□ 0.96
CTCFP49711 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC21.07■□□□□ 0.96
CTCFP49711 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTCFP49711 MRPL20P1-201ENST00000400819 433 ntBASIC21.07■□□□□ 0.96
CTCFP49711 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTCFP49711 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC21.07■□□□□ 0.96
CTCFP49711 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms