Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.22■□□□□ 0.35
SOX3P41225 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
SOX3P41225 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC17.22■□□□□ 0.35
SOX3P41225 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.22■□□□□ 0.35
SOX3P41225 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.22■□□□□ 0.35
SOX3P41225 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 MED25-212ENST00000618715 1467 ntTSL 5 BASIC17.22■□□□□ 0.35
SOX3P41225 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
SOX3P41225 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC17.22■□□□□ 0.35
SOX3P41225 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
SOX3P41225 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.22■□□□□ 0.35
SOX3P41225 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
SOX3P41225 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
SOX3P41225 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
SOX3P41225 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.21■□□□□ 0.35
SOX3P41225 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.21■□□□□ 0.35
SOX3P41225 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.21■□□□□ 0.35
SOX3P41225 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
SOX3P41225 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.21■□□□□ 0.35
SOX3P41225 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.21■□□□□ 0.35
SOX3P41225 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.21■□□□□ 0.35
SOX3P41225 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.21■□□□□ 0.35
SOX3P41225 AC024243.1-201ENST00000609234 778 ntBASIC17.21■□□□□ 0.35
SOX3P41225 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC17.21■□□□□ 0.35
SOX3P41225 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.21■□□□□ 0.35
SOX3P41225 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.21■□□□□ 0.35
SOX3P41225 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC17.21■□□□□ 0.35
SOX3P41225 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
SOX3P41225 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.21■□□□□ 0.34
SOX3P41225 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.21■□□□□ 0.34
SOX3P41225 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
SOX3P41225 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
SOX3P41225 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.2■□□□□ 0.34
SOX3P41225 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.2■□□□□ 0.34
SOX3P41225 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.2■□□□□ 0.34
SOX3P41225 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
SOX3P41225 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.2■□□□□ 0.34
SOX3P41225 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.2■□□□□ 0.34
SOX3P41225 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC17.2■□□□□ 0.34
SOX3P41225 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.2■□□□□ 0.34
SOX3P41225 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.2■□□□□ 0.34
SOX3P41225 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.2■□□□□ 0.34
SOX3P41225 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC17.2■□□□□ 0.34
SOX3P41225 AC068587.9-201ENST00000641814 219 ntBASIC17.2■□□□□ 0.34
SOX3P41225 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.2■□□□□ 0.34
SOX3P41225 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
SOX3P41225 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.2■□□□□ 0.34
SOX3P41225 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC17.2■□□□□ 0.34
SOX3P41225 AC020916.1-201ENST00000587762 1774 ntBASIC17.2■□□□□ 0.34
SOX3P41225 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
SOX3P41225 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SOX3P41225 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SOX3P41225 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.19■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms