Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNFP41002 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNFP41002 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC18.4■□□□□ 0.54
CCNFP41002 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CCNFP41002 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
CCNFP41002 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNFP41002 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
CCNFP41002 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNFP41002 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
CCNFP41002 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.54
CCNFP41002 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCNFP41002 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCNFP41002 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
CCNFP41002 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC18.39■□□□□ 0.54
CCNFP41002 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCNFP41002 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
CCNFP41002 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC18.39■□□□□ 0.53
CCNFP41002 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
CCNFP41002 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 SNCG-201ENST00000348795 684 ntTSL 2 BASIC18.39■□□□□ 0.53
CCNFP41002 TSPY17P-201ENST00000450329 467 ntBASIC18.39■□□□□ 0.53
CCNFP41002 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
CCNFP41002 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.39■□□□□ 0.53
CCNFP41002 NAPSB-206ENST00000562112 1266 ntBASIC18.39■□□□□ 0.53
CCNFP41002 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.39■□□□□ 0.53
CCNFP41002 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
CCNFP41002 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
CCNFP41002 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.39■□□□□ 0.53
CCNFP41002 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
CCNFP41002 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 TNRC18P3-201ENST00000441896 2691 ntBASIC18.38■□□□□ 0.53
CCNFP41002 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 HLA-DQB1-201ENST00000374943 1656 ntBASIC18.38■□□□□ 0.53
CCNFP41002 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.38■□□□□ 0.53
CCNFP41002 TSPY14P-201ENST00000303979 915 ntBASIC18.38■□□□□ 0.53
CCNFP41002 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.38■□□□□ 0.53
CCNFP41002 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.38■□□□□ 0.53
CCNFP41002 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 AC116562.4-202ENST00000641738 218 ntBASIC18.38■□□□□ 0.53
CCNFP41002 AL096828.2-201ENST00000567259 1965 ntBASIC18.38■□□□□ 0.53
CCNFP41002 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
CCNFP41002 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.38■□□□□ 0.53
CCNFP41002 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.38■□□□□ 0.53
CCNFP41002 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CCNFP41002 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
CCNFP41002 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
CCNFP41002 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
CCNFP41002 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
CCNFP41002 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.37■□□□□ 0.53
CCNFP41002 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNFP41002 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.37■□□□□ 0.53
CCNFP41002 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.37■□□□□ 0.53
CCNFP41002 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.37■□□□□ 0.53
CCNFP41002 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNFP41002 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
CCNFP41002 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
CCNFP41002 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNFP41002 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.37■□□□□ 0.53
CCNFP41002 AP000593.1-201ENST00000393668 712 ntBASIC18.37■□□□□ 0.53
CCNFP41002 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNFP41002 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCNFP41002 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC18.37■□□□□ 0.53
CCNFP41002 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
CCNFP41002 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC18.37■□□□□ 0.53
CCNFP41002 EGLN1P1-201ENST00000531623 762 ntBASIC18.37■□□□□ 0.53
CCNFP41002 AL023803.3-201ENST00000615559 522 ntBASIC18.37■□□□□ 0.53
CCNFP41002 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNFP41002 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
CCNFP41002 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
CCNFP41002 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms