Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
COL18A1P39060 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC24.04■■□□□ 1.44
COL18A1P39060 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC24.04■■□□□ 1.44
COL18A1P39060 SOD2-201ENST00000337404 991 ntTSL 2 BASIC24.03■■□□□ 1.44
COL18A1P39060 CRCP-205ENST00000431089 942 ntTSL 2 BASIC24.03■■□□□ 1.44
COL18A1P39060 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC24.03■■□□□ 1.44
COL18A1P39060 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL18A1P39060 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
COL18A1P39060 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC24.03■■□□□ 1.44
COL18A1P39060 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
COL18A1P39060 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC24.03■■□□□ 1.44
COL18A1P39060 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL18A1P39060 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
COL18A1P39060 AC132938.6-201ENST00000623828 1655 ntBASIC24.03■■□□□ 1.44
COL18A1P39060 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL18A1P39060 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC24.03■■□□□ 1.44
COL18A1P39060 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL18A1P39060 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL18A1P39060 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC24.03■■□□□ 1.44
COL18A1P39060 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC24.03■■□□□ 1.44
COL18A1P39060 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL18A1P39060 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC24.03■■□□□ 1.44
COL18A1P39060 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL18A1P39060 PMPCAP1-201ENST00000508114 1576 ntBASIC24.03■■□□□ 1.44
COL18A1P39060 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
COL18A1P39060 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
COL18A1P39060 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC24.02■■□□□ 1.44
COL18A1P39060 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC24.02■■□□□ 1.44
COL18A1P39060 SIGLEC16-201ENST00000599858 1437 ntBASIC24.02■■□□□ 1.44
COL18A1P39060 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC24.02■■□□□ 1.44
COL18A1P39060 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC24.02■■□□□ 1.44
COL18A1P39060 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC24.02■■□□□ 1.44
COL18A1P39060 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC24.02■■□□□ 1.44
COL18A1P39060 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
COL18A1P39060 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC24.02■■□□□ 1.44
COL18A1P39060 DNAJB3-201ENST00000446806 729 ntBASIC24.02■■□□□ 1.44
COL18A1P39060 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC24.02■■□□□ 1.44
COL18A1P39060 RNA5SP416-201ENST00000516838 111 ntBASIC24.02■■□□□ 1.44
COL18A1P39060 AC002347.1-201ENST00000569543 541 ntBASIC24.02■■□□□ 1.44
COL18A1P39060 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC24.02■■□□□ 1.44
COL18A1P39060 AC134684.3-201ENST00000641758 218 ntBASIC24.02■■□□□ 1.44
COL18A1P39060 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
COL18A1P39060 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
COL18A1P39060 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC24.02■■□□□ 1.44
COL18A1P39060 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC24.02■■□□□ 1.44
COL18A1P39060 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC24.02■■□□□ 1.44
COL18A1P39060 USP48-205ENST00000421625 2818 ntTSL 2 BASIC24.02■■□□□ 1.44
COL18A1P39060 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC24.02■■□□□ 1.44
COL18A1P39060 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
COL18A1P39060 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC24.02■■□□□ 1.44
COL18A1P39060 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.43
COL18A1P39060 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL18A1P39060 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC24.01■■□□□ 1.43
COL18A1P39060 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
COL18A1P39060 AP006288.1-201ENST00000446065 395 ntBASIC24.01■■□□□ 1.43
COL18A1P39060 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
COL18A1P39060 SDCCAG3P1-201ENST00000589292 1150 ntBASIC24.01■■□□□ 1.43
COL18A1P39060 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
COL18A1P39060 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC24.01■■□□□ 1.43
COL18A1P39060 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC24.01■■□□□ 1.43
COL18A1P39060 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL18A1P39060 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL18A1P39060 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
COL18A1P39060 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
COL18A1P39060 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL18A1P39060 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL18A1P39060 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC24.01■■□□□ 1.43
COL18A1P39060 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
COL18A1P39060 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC24.01■■□□□ 1.43
COL18A1P39060 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
COL18A1P39060 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC24■■□□□ 1.43
COL18A1P39060 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC24■■□□□ 1.43
COL18A1P39060 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC24■■□□□ 1.43
COL18A1P39060 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
COL18A1P39060 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC24■■□□□ 1.43
COL18A1P39060 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC24■■□□□ 1.43
COL18A1P39060 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC24■■□□□ 1.43
COL18A1P39060 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC24■■□□□ 1.43
COL18A1P39060 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC24■■□□□ 1.43
COL18A1P39060 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC24■■□□□ 1.43
COL18A1P39060 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
COL18A1P39060 AC022898.2-201ENST00000616822 1312 ntBASIC24■■□□□ 1.43
COL18A1P39060 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC24■■□□□ 1.43
COL18A1P39060 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
COL18A1P39060 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
COL18A1P39060 COBL-210ENST00000632460 1941 ntTSL 5 BASIC24■■□□□ 1.43
COL18A1P39060 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC24■■□□□ 1.43
COL18A1P39060 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
COL18A1P39060 AC007952.6-201ENST00000573168 2673 ntBASIC23.99■■□□□ 1.43
COL18A1P39060 AC003957.1-201ENST00000625108 2673 ntBASIC23.99■■□□□ 1.43
COL18A1P39060 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC23.99■■□□□ 1.43
COL18A1P39060 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
COL18A1P39060 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
COL18A1P39060 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC23.99■■□□□ 1.43
COL18A1P39060 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
COL18A1P39060 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
COL18A1P39060 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
COL18A1P39060 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
COL18A1P39060 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
COL18A1P39060 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC23.99■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms