Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.92■□□□□ 0.46
SHMT2P34897 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.92■□□□□ 0.46
SHMT2P34897 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC17.92■□□□□ 0.46
SHMT2P34897 AL157888.1-201ENST00000631930 593 ntBASIC17.92■□□□□ 0.46
SHMT2P34897 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC17.92■□□□□ 0.46
SHMT2P34897 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC17.92■□□□□ 0.46
SHMT2P34897 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
SHMT2P34897 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.92■□□□□ 0.46
SHMT2P34897 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
SHMT2P34897 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHMT2P34897 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.91■□□□□ 0.46
SHMT2P34897 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.91■□□□□ 0.46
SHMT2P34897 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.91■□□□□ 0.46
SHMT2P34897 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHMT2P34897 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SHMT2P34897 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SHMT2P34897 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHMT2P34897 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.91■□□□□ 0.46
SHMT2P34897 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHMT2P34897 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.91■□□□□ 0.46
SHMT2P34897 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHMT2P34897 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.91■□□□□ 0.46
SHMT2P34897 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHMT2P34897 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC17.91■□□□□ 0.46
SHMT2P34897 AC112907.2-201ENST00000448639 330 ntBASIC17.91■□□□□ 0.46
SHMT2P34897 AL671277.2-201ENST00000458060 996 ntBASIC17.91■□□□□ 0.46
SHMT2P34897 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC17.91■□□□□ 0.46
SHMT2P34897 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHMT2P34897 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SHMT2P34897 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
SHMT2P34897 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SHMT2P34897 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.91■□□□□ 0.46
SHMT2P34897 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHMT2P34897 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.91■□□□□ 0.46
SHMT2P34897 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.91■□□□□ 0.46
SHMT2P34897 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.91■□□□□ 0.46
SHMT2P34897 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHMT2P34897 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
SHMT2P34897 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.9■□□□□ 0.46
SHMT2P34897 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.9■□□□□ 0.46
SHMT2P34897 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
SHMT2P34897 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SHMT2P34897 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 ARMC10P1-201ENST00000313754 855 ntBASIC17.9■□□□□ 0.46
SHMT2P34897 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.9■□□□□ 0.46
SHMT2P34897 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.9■□□□□ 0.46
SHMT2P34897 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
SHMT2P34897 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
SHMT2P34897 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
SHMT2P34897 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC17.9■□□□□ 0.46
SHMT2P34897 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.9■□□□□ 0.46
SHMT2P34897 MYLKP1-201ENST00000509077 1580 ntBASIC17.9■□□□□ 0.46
SHMT2P34897 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC17.9■□□□□ 0.46
SHMT2P34897 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
SHMT2P34897 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
SHMT2P34897 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SHMT2P34897 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SHMT2P34897 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SHMT2P34897 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SHMT2P34897 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SHMT2P34897 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SHMT2P34897 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SHMT2P34897 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SHMT2P34897 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHMT2P34897 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHMT2P34897 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC17.89■□□□□ 0.45
SHMT2P34897 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SHMT2P34897 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHMT2P34897 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SHMT2P34897 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.89■□□□□ 0.45
SHMT2P34897 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.89■□□□□ 0.45
SHMT2P34897 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC17.89■□□□□ 0.45
SHMT2P34897 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.89■□□□□ 0.45
SHMT2P34897 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.89■□□□□ 0.45
SHMT2P34897 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.89■□□□□ 0.45
SHMT2P34897 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC17.89■□□□□ 0.45
SHMT2P34897 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.89■□□□□ 0.45
SHMT2P34897 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SHMT2P34897 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 67.6 ms