Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.77■□□□□ 0.6
COL9A1P20849 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
COL9A1P20849 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.77■□□□□ 0.6
COL9A1P20849 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC18.77■□□□□ 0.6
COL9A1P20849 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
COL9A1P20849 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC18.77■□□□□ 0.6
COL9A1P20849 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC18.77■□□□□ 0.6
COL9A1P20849 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.77■□□□□ 0.6
COL9A1P20849 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL9A1P20849 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
COL9A1P20849 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
COL9A1P20849 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.77■□□□□ 0.59
COL9A1P20849 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.76■□□□□ 0.59
COL9A1P20849 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL9A1P20849 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
COL9A1P20849 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL9A1P20849 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
COL9A1P20849 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL9A1P20849 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
COL9A1P20849 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.76■□□□□ 0.59
COL9A1P20849 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL9A1P20849 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.76■□□□□ 0.59
COL9A1P20849 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
COL9A1P20849 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL9A1P20849 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL9A1P20849 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL9A1P20849 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL9A1P20849 PMS2P4-201ENST00000412466 1052 ntBASIC18.76■□□□□ 0.59
COL9A1P20849 TERF1P3-201ENST00000505638 1227 ntBASIC18.76■□□□□ 0.59
COL9A1P20849 DUT-210ENST00000559935 569 ntTSL 3 BASIC18.76■□□□□ 0.59
COL9A1P20849 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC18.76■□□□□ 0.59
COL9A1P20849 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL9A1P20849 AC006333.2-201ENST00000607957 2099 ntBASIC18.76■□□□□ 0.59
COL9A1P20849 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.76■□□□□ 0.59
COL9A1P20849 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL9A1P20849 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL9A1P20849 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL9A1P20849 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.76■□□□□ 0.59
COL9A1P20849 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL9A1P20849 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL9A1P20849 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL9A1P20849 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL9A1P20849 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
COL9A1P20849 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL9A1P20849 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL9A1P20849 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL9A1P20849 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
COL9A1P20849 CD82-202ENST00000342935 967 ntTSL 5 BASIC18.75■□□□□ 0.59
COL9A1P20849 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL9A1P20849 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC18.75■□□□□ 0.59
COL9A1P20849 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC18.75■□□□□ 0.59
COL9A1P20849 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC18.75■□□□□ 0.59
COL9A1P20849 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.75■□□□□ 0.59
COL9A1P20849 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC18.75■□□□□ 0.59
COL9A1P20849 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC18.75■□□□□ 0.59
COL9A1P20849 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.75■□□□□ 0.59
COL9A1P20849 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC18.75■□□□□ 0.59
COL9A1P20849 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL9A1P20849 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL9A1P20849 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.75■□□□□ 0.59
COL9A1P20849 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL9A1P20849 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC18.74■□□□□ 0.59
COL9A1P20849 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL9A1P20849 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL9A1P20849 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.74■□□□□ 0.59
COL9A1P20849 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL9A1P20849 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.74■□□□□ 0.59
COL9A1P20849 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL9A1P20849 MED16-201ENST00000269814 1199 ntTSL 5 BASIC18.74■□□□□ 0.59
COL9A1P20849 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL9A1P20849 ATP5C1-201ENST00000335698 1078 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL9A1P20849 AL139400.1-201ENST00000366220 510 ntBASIC18.74■□□□□ 0.59
COL9A1P20849 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
COL9A1P20849 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
COL9A1P20849 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC18.74■□□□□ 0.59
COL9A1P20849 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.74■□□□□ 0.59
COL9A1P20849 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.74■□□□□ 0.59
COL9A1P20849 RNA5SP421-201ENST00000516864 134 ntBASIC18.74■□□□□ 0.59
COL9A1P20849 AC064836.3-201ENST00000607928 673 ntBASIC18.74■□□□□ 0.59
COL9A1P20849 C20orf181-201ENST00000623918 480 ntBASIC18.74■□□□□ 0.59
COL9A1P20849 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL9A1P20849 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.74■□□□□ 0.59
COL9A1P20849 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL9A1P20849 AC141586.3-201ENST00000562166 1838 ntBASIC18.74■□□□□ 0.59
COL9A1P20849 AC034236.2-201ENST00000606662 1610 ntBASIC18.74■□□□□ 0.59
COL9A1P20849 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL9A1P20849 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL9A1P20849 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.74■□□□□ 0.59
COL9A1P20849 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL9A1P20849 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL9A1P20849 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
COL9A1P20849 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL9A1P20849 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms