Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
XRCC1P18887 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
XRCC1P18887 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
XRCC1P18887 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.26■□□□□ 0.51
XRCC1P18887 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
XRCC1P18887 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.25■□□□□ 0.51
XRCC1P18887 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.25■□□□□ 0.51
XRCC1P18887 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.25■□□□□ 0.51
XRCC1P18887 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.25■□□□□ 0.51
XRCC1P18887 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC18.25■□□□□ 0.51
XRCC1P18887 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
XRCC1P18887 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.25■□□□□ 0.51
XRCC1P18887 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
XRCC1P18887 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
XRCC1P18887 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC18.25■□□□□ 0.51
XRCC1P18887 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC1P18887 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
XRCC1P18887 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.24■□□□□ 0.51
XRCC1P18887 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
XRCC1P18887 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.24■□□□□ 0.51
XRCC1P18887 STARP1-201ENST00000397973 869 ntBASIC18.24■□□□□ 0.51
XRCC1P18887 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
XRCC1P18887 AL031133.1-201ENST00000406807 723 ntBASIC18.24■□□□□ 0.51
XRCC1P18887 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC18.24■□□□□ 0.51
XRCC1P18887 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC18.24■□□□□ 0.51
XRCC1P18887 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.24■□□□□ 0.51
XRCC1P18887 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.24■□□□□ 0.51
XRCC1P18887 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC18.24■□□□□ 0.51
XRCC1P18887 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.24■□□□□ 0.51
XRCC1P18887 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC1P18887 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.23■□□□□ 0.51
XRCC1P18887 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.23■□□□□ 0.51
XRCC1P18887 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
XRCC1P18887 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.23■□□□□ 0.51
XRCC1P18887 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.23■□□□□ 0.51
XRCC1P18887 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.23■□□□□ 0.51
XRCC1P18887 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
XRCC1P18887 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
XRCC1P18887 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.23■□□□□ 0.51
XRCC1P18887 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
XRCC1P18887 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC18.23■□□□□ 0.51
XRCC1P18887 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC18.23■□□□□ 0.51
XRCC1P18887 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC18.23■□□□□ 0.51
XRCC1P18887 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC1P18887 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.22■□□□□ 0.51
XRCC1P18887 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
XRCC1P18887 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.22■□□□□ 0.51
XRCC1P18887 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC1P18887 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
XRCC1P18887 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
XRCC1P18887 AC008556.1-201ENST00000610908 2040 ntBASIC18.22■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms