Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A3P12111 AC068472.1-201ENST00000474589 881 ntBASIC18.96■□□□□ 0.63
COL6A3P12111 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC18.96■□□□□ 0.63
COL6A3P12111 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.96■□□□□ 0.63
COL6A3P12111 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.96■□□□□ 0.63
COL6A3P12111 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
COL6A3P12111 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
COL6A3P12111 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.95■□□□□ 0.62
COL6A3P12111 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC18.95■□□□□ 0.62
COL6A3P12111 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC18.95■□□□□ 0.62
COL6A3P12111 BSG-215ENST00000618006 1329 ntTSL 2 BASIC18.95■□□□□ 0.62
COL6A3P12111 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC18.95■□□□□ 0.62
COL6A3P12111 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 AL357033.4-201ENST00000617703 1807 ntBASIC18.95■□□□□ 0.62
COL6A3P12111 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.95■□□□□ 0.62
COL6A3P12111 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.95■□□□□ 0.62
COL6A3P12111 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC18.95■□□□□ 0.62
COL6A3P12111 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 MRPS18AP1-201ENST00000414458 589 ntBASIC18.95■□□□□ 0.62
COL6A3P12111 FO538757.1-201ENST00000623083 1397 ntBASIC18.95■□□□□ 0.62
COL6A3P12111 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC18.95■□□□□ 0.62
COL6A3P12111 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC18.95■□□□□ 0.62
COL6A3P12111 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A3P12111 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.94■□□□□ 0.62
COL6A3P12111 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.94■□□□□ 0.62
COL6A3P12111 MED29-202ENST00000594368 1471 ntTSL 2 BASIC18.94■□□□□ 0.62
COL6A3P12111 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.94■□□□□ 0.62
COL6A3P12111 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.94■□□□□ 0.62
COL6A3P12111 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A3P12111 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A3P12111 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC18.94■□□□□ 0.62
COL6A3P12111 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A3P12111 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A3P12111 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
COL6A3P12111 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A3P12111 AC003669.1-201ENST00000334569 611 ntBASIC18.94■□□□□ 0.62
COL6A3P12111 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A3P12111 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.94■□□□□ 0.62
COL6A3P12111 AC067863.1-201ENST00000494933 530 ntBASIC18.94■□□□□ 0.62
COL6A3P12111 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A3P12111 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.94■□□□□ 0.62
COL6A3P12111 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A3P12111 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.94■□□□□ 0.62
COL6A3P12111 AL121761.2-201ENST00000598007 1648 ntBASIC18.94■□□□□ 0.62
COL6A3P12111 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A3P12111 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.94■□□□□ 0.62
COL6A3P12111 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.94■□□□□ 0.62
COL6A3P12111 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
COL6A3P12111 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC18.93■□□□□ 0.62
COL6A3P12111 AC079776.1-201ENST00000401540 1152 ntBASIC18.93■□□□□ 0.62
COL6A3P12111 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.93■□□□□ 0.62
COL6A3P12111 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.93■□□□□ 0.62
COL6A3P12111 AL662799.1-202ENST00000614205 422 ntBASIC18.93■□□□□ 0.62
COL6A3P12111 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC18.93■□□□□ 0.62
COL6A3P12111 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 AC009237.14-201ENST00000609975 1594 ntBASIC18.93■□□□□ 0.62
COL6A3P12111 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
COL6A3P12111 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.93■□□□□ 0.62
COL6A3P12111 IGHV3OR16-6-201ENST00000568775 360 ntBASIC18.93■□□□□ 0.62
COL6A3P12111 OR7E47P-204ENST00000575924 449 ntBASIC18.93■□□□□ 0.62
COL6A3P12111 Six3os1_5.1-201ENST00000611000 271 ntBASIC18.93■□□□□ 0.62
COL6A3P12111 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC18.93■□□□□ 0.62
COL6A3P12111 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
COL6A3P12111 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 AL627223.1-201ENST00000416693 442 ntBASIC18.93■□□□□ 0.62
COL6A3P12111 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.93■□□□□ 0.62
COL6A3P12111 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC18.93■□□□□ 0.62
COL6A3P12111 AC009093.7-201ENST00000623853 1223 ntBASIC18.93■□□□□ 0.62
COL6A3P12111 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A3P12111 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms