Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC19.17■□□□□ 0.66
APOEP02649 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.17■□□□□ 0.66
APOEP02649 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.17■□□□□ 0.66
APOEP02649 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.17■□□□□ 0.66
APOEP02649 MYLKP1-201ENST00000509077 1580 ntBASIC19.17■□□□□ 0.66
APOEP02649 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC19.17■□□□□ 0.66
APOEP02649 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC19.17■□□□□ 0.66
APOEP02649 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.17■□□□□ 0.66
APOEP02649 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC19.17■□□□□ 0.66
APOEP02649 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC19.17■□□□□ 0.66
APOEP02649 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
APOEP02649 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
APOEP02649 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
APOEP02649 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
APOEP02649 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
APOEP02649 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.16■□□□□ 0.66
APOEP02649 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
APOEP02649 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
APOEP02649 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
APOEP02649 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
APOEP02649 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
APOEP02649 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
APOEP02649 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
APOEP02649 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
APOEP02649 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
APOEP02649 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
APOEP02649 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.16■□□□□ 0.66
APOEP02649 BICD1-207ENST00000551848 1962 ntBASIC19.16■□□□□ 0.66
APOEP02649 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
APOEP02649 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
APOEP02649 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC19.16■□□□□ 0.66
APOEP02649 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC19.16■□□□□ 0.66
APOEP02649 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
APOEP02649 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC19.16■□□□□ 0.66
APOEP02649 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.16■□□□□ 0.66
APOEP02649 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC19.16■□□□□ 0.66
APOEP02649 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.16■□□□□ 0.66
APOEP02649 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.16■□□□□ 0.66
APOEP02649 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
APOEP02649 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC19.16■□□□□ 0.66
APOEP02649 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC19.16■□□□□ 0.66
APOEP02649 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC19.16■□□□□ 0.66
APOEP02649 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.16■□□□□ 0.66
APOEP02649 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.16■□□□□ 0.66
APOEP02649 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC19.16■□□□□ 0.66
APOEP02649 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
APOEP02649 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
APOEP02649 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.15■□□□□ 0.66
APOEP02649 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
APOEP02649 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
APOEP02649 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
APOEP02649 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
APOEP02649 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
APOEP02649 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
APOEP02649 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
APOEP02649 AL499627.1-201ENST00000569373 2188 ntBASIC19.15■□□□□ 0.66
APOEP02649 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC19.15■□□□□ 0.66
APOEP02649 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
APOEP02649 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
APOEP02649 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
APOEP02649 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
APOEP02649 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
APOEP02649 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
APOEP02649 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
APOEP02649 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
APOEP02649 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
APOEP02649 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
APOEP02649 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
APOEP02649 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
APOEP02649 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC19.15■□□□□ 0.66
APOEP02649 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
APOEP02649 AL163051.1-201ENST00000569214 1512 ntBASIC19.15■□□□□ 0.66
APOEP02649 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
APOEP02649 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
APOEP02649 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
APOEP02649 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC19.14■□□□□ 0.66
APOEP02649 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
APOEP02649 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
APOEP02649 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
APOEP02649 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
APOEP02649 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
APOEP02649 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
APOEP02649 LINC01311-201ENST00000565162 1445 ntBASIC19.14■□□□□ 0.65
APOEP02649 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
APOEP02649 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
APOEP02649 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
APOEP02649 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
APOEP02649 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC19.14■□□□□ 0.65
APOEP02649 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.14■□□□□ 0.65
APOEP02649 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
APOEP02649 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
APOEP02649 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
APOEP02649 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
APOEP02649 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 83 ms