Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC15.31■□□□□ 0.04
ABCA1O95477 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
ABCA1O95477 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC15.31■□□□□ 0.04
ABCA1O95477 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 AC090340.1-201ENST00000620778 4980 ntBASIC15.31■□□□□ 0.04
ABCA1O95477 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC15.31■□□□□ 0.04
ABCA1O95477 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
ABCA1O95477 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC15.31■□□□□ 0.04
ABCA1O95477 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
ABCA1O95477 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC15.31■□□□□ 0.04
ABCA1O95477 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.31■□□□□ 0.04
ABCA1O95477 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.31■□□□□ 0.04
ABCA1O95477 AP001005.1-201ENST00000571755 1248 ntBASIC15.31■□□□□ 0.04
ABCA1O95477 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.31■□□□□ 0.04
ABCA1O95477 IGHV3OR16-7-201ENST00000604106 360 ntBASIC15.31■□□□□ 0.04
ABCA1O95477 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
ABCA1O95477 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 AC243591.1-201ENST00000452967 1364 ntBASIC15.3■□□□□ 0.04
ABCA1O95477 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.3■□□□□ 0.04
ABCA1O95477 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC15.3■□□□□ 0.04
ABCA1O95477 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC15.3■□□□□ 0.04
ABCA1O95477 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC15.3■□□□□ 0.04
ABCA1O95477 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
ABCA1O95477 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.3■□□□□ 0.04
ABCA1O95477 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.3■□□□□ 0.04
ABCA1O95477 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 AC092865.5-201ENST00000545435 363 ntBASIC15.3■□□□□ 0.04
ABCA1O95477 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC15.3■□□□□ 0.04
ABCA1O95477 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC15.3■□□□□ 0.04
ABCA1O95477 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC15.3■□□□□ 0.04
ABCA1O95477 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.3■□□□□ 0.04
ABCA1O95477 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 NSUN5P1-202ENST00000421140 1535 ntBASIC15.3■□□□□ 0.04
ABCA1O95477 NSUN5P2-203ENST00000457352 1529 ntBASIC15.3■□□□□ 0.04
ABCA1O95477 AL109659.2-201ENST00000606809 1674 ntBASIC15.3■□□□□ 0.04
ABCA1O95477 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC15.3■□□□□ 0.04
ABCA1O95477 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
ABCA1O95477 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ABCA1O95477 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.29■□□□□ 0.04
ABCA1O95477 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC15.29■□□□□ 0.04
ABCA1O95477 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC15.29■□□□□ 0.04
ABCA1O95477 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
ABCA1O95477 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
ABCA1O95477 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC15.29■□□□□ 0.04
ABCA1O95477 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
ABCA1O95477 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 AP000974.1-201ENST00000623909 2387 ntBASIC15.29■□□□□ 0.04
ABCA1O95477 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC15.29■□□□□ 0.04
ABCA1O95477 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.29■□□□□ 0.04
ABCA1O95477 EMD-201ENST00000369835 966 ntTSL 3 BASIC15.29■□□□□ 0.04
ABCA1O95477 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC15.29■□□□□ 0.04
ABCA1O95477 IGHGP-201ENST00000390555 1178 ntBASIC15.29■□□□□ 0.04
ABCA1O95477 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC15.29■□□□□ 0.04
ABCA1O95477 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC15.29■□□□□ 0.04
ABCA1O95477 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC15.29■□□□□ 0.04
ABCA1O95477 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.29■□□□□ 0.04
ABCA1O95477 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 GPR32P1-201ENST00000601788 811 ntBASIC15.29■□□□□ 0.04
ABCA1O95477 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ABCA1O95477 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms