Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTDNEP1O95476 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTDNEP1O95476 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.19■□□□□ 0.98
CTDNEP1O95476 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTDNEP1O95476 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 AR-207ENST00000612010 3896 ntTSL 5 BASIC21.19■□□□□ 0.98
CTDNEP1O95476 AC134043.2-201ENST00000624206 2238 ntBASIC21.19■□□□□ 0.98
CTDNEP1O95476 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTDNEP1O95476 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC21.18■□□□□ 0.98
CTDNEP1O95476 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTDNEP1O95476 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC21.18■□□□□ 0.98
CTDNEP1O95476 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDNEP1O95476 AC005521.1-201ENST00000393351 872 ntBASIC21.18■□□□□ 0.98
CTDNEP1O95476 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDNEP1O95476 SLC25A6P5-201ENST00000435663 894 ntBASIC21.18■□□□□ 0.98
CTDNEP1O95476 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.18■□□□□ 0.98
CTDNEP1O95476 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.18■□□□□ 0.98
CTDNEP1O95476 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC21.18■□□□□ 0.98
CTDNEP1O95476 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDNEP1O95476 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC21.18■□□□□ 0.98
CTDNEP1O95476 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CTDNEP1O95476 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC21.18■□□□□ 0.98
CTDNEP1O95476 AC011558.1-201ENST00000623459 338 ntBASIC21.18■□□□□ 0.98
CTDNEP1O95476 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDNEP1O95476 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDNEP1O95476 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDNEP1O95476 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC21.18■□□□□ 0.98
CTDNEP1O95476 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTDNEP1O95476 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDNEP1O95476 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC21.18■□□□□ 0.98
CTDNEP1O95476 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDNEP1O95476 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.18■□□□□ 0.98
CTDNEP1O95476 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CTDNEP1O95476 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC21.18■□□□□ 0.98
CTDNEP1O95476 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CTDNEP1O95476 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDNEP1O95476 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTDNEP1O95476 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDNEP1O95476 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC21.17■□□□□ 0.98
CTDNEP1O95476 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDNEP1O95476 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDNEP1O95476 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDNEP1O95476 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
CTDNEP1O95476 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTDNEP1O95476 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC21.17■□□□□ 0.98
CTDNEP1O95476 AC005363.2-201ENST00000618631 242 ntBASIC21.17■□□□□ 0.98
CTDNEP1O95476 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC21.17■□□□□ 0.98
CTDNEP1O95476 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CTDNEP1O95476 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTDNEP1O95476 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDNEP1O95476 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTDNEP1O95476 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
CTDNEP1O95476 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC21.17■□□□□ 0.98
CTDNEP1O95476 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
CTDNEP1O95476 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC21.16■□□□□ 0.98
CTDNEP1O95476 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC21.16■□□□□ 0.98
CTDNEP1O95476 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 SPDYE15P-201ENST00000424157 909 ntBASIC21.16■□□□□ 0.98
CTDNEP1O95476 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC21.16■□□□□ 0.98
CTDNEP1O95476 AC139887.4-201ENST00000607877 719 ntBASIC21.16■□□□□ 0.98
CTDNEP1O95476 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CTDNEP1O95476 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTDNEP1O95476 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDNEP1O95476 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC21.15■□□□□ 0.98
CTDNEP1O95476 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDNEP1O95476 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CTDNEP1O95476 LINC00167-201ENST00000530583 1419 ntBASIC21.15■□□□□ 0.98
CTDNEP1O95476 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDNEP1O95476 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
CTDNEP1O95476 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CTDNEP1O95476 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDNEP1O95476 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.15■□□□□ 0.98
CTDNEP1O95476 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
CTDNEP1O95476 AC117947.1-201ENST00000427448 529 ntBASIC21.15■□□□□ 0.98
CTDNEP1O95476 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDNEP1O95476 RASA4DP-201ENST00000460726 1199 ntBASIC21.15■□□□□ 0.98
CTDNEP1O95476 COX11P1-201ENST00000489116 835 ntBASIC21.15■□□□□ 0.98
CTDNEP1O95476 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
CTDNEP1O95476 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
CTDNEP1O95476 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDNEP1O95476 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDNEP1O95476 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.15■□□□□ 0.98
CTDNEP1O95476 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDNEP1O95476 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTDNEP1O95476 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms