Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX3O95343 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.89■□□□□ 0.45
SIX3O95343 FLJ13224-201ENST00000313737 1514 ntBASIC17.89■□□□□ 0.45
SIX3O95343 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SIX3O95343 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX3O95343 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.89■□□□□ 0.45
SIX3O95343 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17.89■□□□□ 0.45
SIX3O95343 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
SIX3O95343 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.89■□□□□ 0.45
SIX3O95343 AC007663.1-201ENST00000438948 1240 ntBASIC17.89■□□□□ 0.45
SIX3O95343 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC17.89■□□□□ 0.45
SIX3O95343 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC17.89■□□□□ 0.45
SIX3O95343 WWOX-216ENST00000569818 525 ntBASIC17.89■□□□□ 0.45
SIX3O95343 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX3O95343 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SIX3O95343 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX3O95343 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX3O95343 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX3O95343 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX3O95343 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
SIX3O95343 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.45
SIX3O95343 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX3O95343 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.89■□□□□ 0.45
SIX3O95343 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SIX3O95343 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SIX3O95343 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SIX3O95343 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX3O95343 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX3O95343 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX3O95343 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX3O95343 INGX-201ENST00000359239 846 ntBASIC17.88■□□□□ 0.45
SIX3O95343 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.88■□□□□ 0.45
SIX3O95343 CCR12P-201ENST00000446203 998 ntBASIC17.88■□□□□ 0.45
SIX3O95343 TSPY15P-201ENST00000457163 923 ntBASIC17.88■□□□□ 0.45
SIX3O95343 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX3O95343 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SIX3O95343 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SIX3O95343 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX3O95343 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
SIX3O95343 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX3O95343 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SIX3O95343 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.88■□□□□ 0.45
SIX3O95343 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.88■□□□□ 0.45
SIX3O95343 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX3O95343 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX3O95343 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SIX3O95343 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SIX3O95343 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.87■□□□□ 0.45
SIX3O95343 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC17.87■□□□□ 0.45
SIX3O95343 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.87■□□□□ 0.45
SIX3O95343 BX088651.1-201ENST00000540551 451 ntBASIC17.87■□□□□ 0.45
SIX3O95343 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.87■□□□□ 0.45
SIX3O95343 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC17.87■□□□□ 0.45
SIX3O95343 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.87■□□□□ 0.45
SIX3O95343 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC17.87■□□□□ 0.45
SIX3O95343 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
SIX3O95343 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SIX3O95343 LINC01126-201ENST00000623515 1646 ntBASIC17.87■□□□□ 0.45
SIX3O95343 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.86■□□□□ 0.45
SIX3O95343 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 GNAS-203ENST00000306120 1878 ntBASIC17.86■□□□□ 0.45
SIX3O95343 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.86■□□□□ 0.45
SIX3O95343 LINC00896-202ENST00000609602 2128 ntBASIC17.86■□□□□ 0.45
SIX3O95343 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.86■□□□□ 0.45
SIX3O95343 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC17.86■□□□□ 0.45
SIX3O95343 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
SIX3O95343 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.86■□□□□ 0.45
SIX3O95343 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 AC116562.4-202ENST00000641738 218 ntBASIC17.86■□□□□ 0.45
SIX3O95343 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SIX3O95343 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SIX3O95343 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms