Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RNF40O75150 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RNF40O75150 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RNF40O75150 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RNF40O75150 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RNF40O75150 AL031133.1-201ENST00000406807 723 ntBASIC19.73■□□□□ 0.75
RNF40O75150 TSPY5P-201ENST00000426936 936 ntBASIC19.73■□□□□ 0.75
RNF40O75150 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.73■□□□□ 0.75
RNF40O75150 AC092647.4-201ENST00000457211 535 ntBASIC19.73■□□□□ 0.75
RNF40O75150 COX11P1-201ENST00000489116 835 ntBASIC19.73■□□□□ 0.75
RNF40O75150 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.73■□□□□ 0.75
RNF40O75150 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RNF40O75150 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.73■□□□□ 0.75
RNF40O75150 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.73■□□□□ 0.75
RNF40O75150 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RNF40O75150 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC19.73■□□□□ 0.75
RNF40O75150 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RNF40O75150 AC092338.2-201ENST00000568827 1415 ntBASIC19.73■□□□□ 0.75
RNF40O75150 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
RNF40O75150 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RNF40O75150 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.73■□□□□ 0.75
RNF40O75150 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
RNF40O75150 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
RNF40O75150 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
RNF40O75150 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
RNF40O75150 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.72■□□□□ 0.75
RNF40O75150 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.72■□□□□ 0.75
RNF40O75150 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
RNF40O75150 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
RNF40O75150 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
RNF40O75150 LINC00896-202ENST00000609602 2128 ntBASIC19.72■□□□□ 0.75
RNF40O75150 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.72■□□□□ 0.75
RNF40O75150 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC19.72■□□□□ 0.75
RNF40O75150 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.72■□□□□ 0.75
RNF40O75150 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
RNF40O75150 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC19.72■□□□□ 0.75
RNF40O75150 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RNF40O75150 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
RNF40O75150 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
RNF40O75150 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC19.71■□□□□ 0.75
RNF40O75150 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
RNF40O75150 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.71■□□□□ 0.75
RNF40O75150 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.71■□□□□ 0.75
RNF40O75150 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.71■□□□□ 0.75
RNF40O75150 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 AC141257.4-201ENST00000634557 245 ntBASIC19.71■□□□□ 0.75
RNF40O75150 AC136944.6-201ENST00000634818 245 ntBASIC19.71■□□□□ 0.75
RNF40O75150 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
RNF40O75150 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RNF40O75150 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
RNF40O75150 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
RNF40O75150 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
RNF40O75150 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
RNF40O75150 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.7■□□□□ 0.74
RNF40O75150 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 IRX1P1-201ENST00000438849 1838 ntBASIC19.7■□□□□ 0.74
RNF40O75150 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RNF40O75150 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.7■□□□□ 0.74
RNF40O75150 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms