Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CACNA1FO60840 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CACNA1FO60840 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CACNA1FO60840 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC22.93■■□□□ 1.26
CACNA1FO60840 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC22.93■■□□□ 1.26
CACNA1FO60840 CLEC4GP1-201ENST00000596555 870 ntBASIC22.93■■□□□ 1.26
CACNA1FO60840 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC22.93■■□□□ 1.26
CACNA1FO60840 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CACNA1FO60840 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CACNA1FO60840 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CACNA1FO60840 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CACNA1FO60840 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
CACNA1FO60840 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CACNA1FO60840 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC22.93■■□□□ 1.26
CACNA1FO60840 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
CACNA1FO60840 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC22.93■■□□□ 1.26
CACNA1FO60840 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC22.93■■□□□ 1.26
CACNA1FO60840 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC22.92■■□□□ 1.26
CACNA1FO60840 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 MTCL1P1-201ENST00000446207 792 ntBASIC22.92■■□□□ 1.26
CACNA1FO60840 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 AC012313.10-201ENST00000623509 926 ntBASIC22.92■■□□□ 1.26
CACNA1FO60840 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC22.92■■□□□ 1.26
CACNA1FO60840 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC22.92■■□□□ 1.26
CACNA1FO60840 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC22.92■■□□□ 1.26
CACNA1FO60840 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC22.92■■□□□ 1.26
CACNA1FO60840 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC22.92■■□□□ 1.26
CACNA1FO60840 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC22.92■■□□□ 1.26
CACNA1FO60840 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC22.92■■□□□ 1.26
CACNA1FO60840 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC22.92■■□□□ 1.26
CACNA1FO60840 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC22.92■■□□□ 1.26
CACNA1FO60840 ABR-204ENST00000543210 1049 ntTSL 2 BASIC22.92■■□□□ 1.26
CACNA1FO60840 PNN-202ENST00000553331 656 ntTSL 3 BASIC22.92■■□□□ 1.26
CACNA1FO60840 ABR-217ENST00000572441 563 ntTSL 4 BASIC22.92■■□□□ 1.26
CACNA1FO60840 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC22.92■■□□□ 1.26
CACNA1FO60840 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC22.92■■□□□ 1.26
CACNA1FO60840 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CACNA1FO60840 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.91■■□□□ 1.26
CACNA1FO60840 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC22.91■■□□□ 1.26
CACNA1FO60840 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CACNA1FO60840 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC22.91■■□□□ 1.26
CACNA1FO60840 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC22.91■■□□□ 1.26
CACNA1FO60840 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC22.91■■□□□ 1.26
CACNA1FO60840 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CACNA1FO60840 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CACNA1FO60840 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC22.91■■□□□ 1.26
CACNA1FO60840 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC22.91■■□□□ 1.26
CACNA1FO60840 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC22.91■■□□□ 1.26
CACNA1FO60840 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC22.91■■□□□ 1.26
CACNA1FO60840 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CACNA1FO60840 AL354751.1-201ENST00000412768 1863 ntBASIC22.91■■□□□ 1.26
CACNA1FO60840 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CACNA1FO60840 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC22.91■■□□□ 1.26
CACNA1FO60840 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CACNA1FO60840 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
CACNA1FO60840 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
CACNA1FO60840 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
CACNA1FO60840 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC22.9■■□□□ 1.26
CACNA1FO60840 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CACNA1FO60840 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CACNA1FO60840 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CACNA1FO60840 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC22.9■■□□□ 1.26
CACNA1FO60840 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC22.9■■□□□ 1.26
CACNA1FO60840 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CACNA1FO60840 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC22.9■■□□□ 1.26
CACNA1FO60840 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
CACNA1FO60840 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
CACNA1FO60840 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC22.9■■□□□ 1.26
CACNA1FO60840 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC22.9■■□□□ 1.26
CACNA1FO60840 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC22.9■■□□□ 1.26
CACNA1FO60840 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC22.9■■□□□ 1.26
CACNA1FO60840 SDHD-206ENST00000528182 754 ntTSL 3 BASIC22.9■■□□□ 1.26
CACNA1FO60840 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC22.9■■□□□ 1.26
CACNA1FO60840 AC099336.1-202ENST00000602961 463 ntBASIC22.9■■□□□ 1.26
CACNA1FO60840 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CACNA1FO60840 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CACNA1FO60840 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC22.9■■□□□ 1.26
CACNA1FO60840 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CACNA1FO60840 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CACNA1FO60840 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC22.9■■□□□ 1.26
CACNA1FO60840 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CACNA1FO60840 AC010460.3-201ENST00000511359 1579 ntBASIC22.9■■□□□ 1.26
CACNA1FO60840 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
CACNA1FO60840 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC22.89■■□□□ 1.26
CACNA1FO60840 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
CACNA1FO60840 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC22.89■■□□□ 1.26
CACNA1FO60840 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms