Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC19.96■□□□□ 0.79
CLDN3O15551 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.96■□□□□ 0.79
CLDN3O15551 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.96■□□□□ 0.79
CLDN3O15551 AC008687.5-201ENST00000593746 558 ntBASIC19.96■□□□□ 0.79
CLDN3O15551 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.96■□□□□ 0.79
CLDN3O15551 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC19.96■□□□□ 0.79
CLDN3O15551 KRT89P-201ENST00000620027 1478 ntBASIC19.96■□□□□ 0.79
CLDN3O15551 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 AL024508.2-201ENST00000607749 1894 ntBASIC19.96■□□□□ 0.79
CLDN3O15551 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC19.96■□□□□ 0.79
CLDN3O15551 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
CLDN3O15551 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CLDN3O15551 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
CLDN3O15551 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
CLDN3O15551 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.79
CLDN3O15551 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.95■□□□□ 0.78
CLDN3O15551 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CLDN3O15551 AC007613.1-201ENST00000572811 2597 ntBASIC19.95■□□□□ 0.78
CLDN3O15551 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CLDN3O15551 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.95■□□□□ 0.78
CLDN3O15551 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.95■□□□□ 0.78
CLDN3O15551 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.95■□□□□ 0.78
CLDN3O15551 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC19.95■□□□□ 0.78
CLDN3O15551 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CLDN3O15551 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC19.95■□□□□ 0.78
CLDN3O15551 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.95■□□□□ 0.78
CLDN3O15551 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
CLDN3O15551 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC19.95■□□□□ 0.78
CLDN3O15551 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.95■□□□□ 0.78
CLDN3O15551 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.95■□□□□ 0.78
CLDN3O15551 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC19.95■□□□□ 0.78
CLDN3O15551 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
CLDN3O15551 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
CLDN3O15551 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN3O15551 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN3O15551 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC19.94■□□□□ 0.78
CLDN3O15551 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN3O15551 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN3O15551 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN3O15551 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN3O15551 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN3O15551 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC19.94■□□□□ 0.78
CLDN3O15551 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.94■□□□□ 0.78
CLDN3O15551 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.94■□□□□ 0.78
CLDN3O15551 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN3O15551 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.94■□□□□ 0.78
CLDN3O15551 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC19.94■□□□□ 0.78
CLDN3O15551 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.94■□□□□ 0.78
CLDN3O15551 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.94■□□□□ 0.78
CLDN3O15551 RNF126P1-202ENST00000569893 925 ntBASIC19.94■□□□□ 0.78
CLDN3O15551 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC19.94■□□□□ 0.78
CLDN3O15551 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC19.94■□□□□ 0.78
CLDN3O15551 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.94■□□□□ 0.78
CLDN3O15551 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
CLDN3O15551 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN3O15551 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC19.94■□□□□ 0.78
CLDN3O15551 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN3O15551 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
CLDN3O15551 GMCL1P1-201ENST00000463439 1581 ntBASIC19.94■□□□□ 0.78
CLDN3O15551 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC19.94■□□□□ 0.78
CLDN3O15551 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC19.94■□□□□ 0.78
CLDN3O15551 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.94■□□□□ 0.78
CLDN3O15551 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN3O15551 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CLDN3O15551 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CLDN3O15551 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC19.93■□□□□ 0.78
CLDN3O15551 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms