Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.1■□□□□ 0.33
CACNA1AO00555 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC17.1■□□□□ 0.33
CACNA1AO00555 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CACNA1AO00555 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.1■□□□□ 0.33
CACNA1AO00555 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC17.1■□□□□ 0.33
CACNA1AO00555 AL033527.4-201ENST00000641026 673 ntBASIC17.1■□□□□ 0.33
CACNA1AO00555 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
CACNA1AO00555 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.1■□□□□ 0.33
CACNA1AO00555 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
CACNA1AO00555 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC17.1■□□□□ 0.33
CACNA1AO00555 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CACNA1AO00555 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CACNA1AO00555 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC17.1■□□□□ 0.33
CACNA1AO00555 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.1■□□□□ 0.33
CACNA1AO00555 KLF2P3-201ENST00000451977 1087 ntBASIC17.1■□□□□ 0.33
CACNA1AO00555 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 SPTSSB-204ENST00000617024 1292 ntBASIC17.1■□□□□ 0.33
CACNA1AO00555 WWC2-AS2-201ENST00000578387 2183 ntBASIC17.1■□□□□ 0.33
CACNA1AO00555 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
CACNA1AO00555 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
CACNA1AO00555 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CACNA1AO00555 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
CACNA1AO00555 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.09■□□□□ 0.33
CACNA1AO00555 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC17.09■□□□□ 0.33
CACNA1AO00555 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CACNA1AO00555 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.09■□□□□ 0.33
CACNA1AO00555 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
CACNA1AO00555 REXO1L3P-201ENST00000622202 1288 ntBASIC17.09■□□□□ 0.33
CACNA1AO00555 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
CACNA1AO00555 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CACNA1AO00555 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC17.09■□□□□ 0.33
CACNA1AO00555 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CACNA1AO00555 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CACNA1AO00555 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CACNA1AO00555 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
CACNA1AO00555 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.09■□□□□ 0.33
CACNA1AO00555 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
CACNA1AO00555 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC17.09■□□□□ 0.33
CACNA1AO00555 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
CACNA1AO00555 IGHV3-65-201ENST00000523210 341 ntBASIC17.09■□□□□ 0.33
CACNA1AO00555 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.09■□□□□ 0.33
CACNA1AO00555 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.09■□□□□ 0.33
CACNA1AO00555 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
CACNA1AO00555 AC096734.2-201ENST00000562054 433 ntBASIC17.09■□□□□ 0.33
CACNA1AO00555 COG4-212ENST00000564653 590 ntTSL 5 BASIC17.09■□□□□ 0.33
CACNA1AO00555 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.09■□□□□ 0.33
CACNA1AO00555 AL390754.1-201ENST00000619088 582 ntBASIC17.09■□□□□ 0.33
CACNA1AO00555 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
CACNA1AO00555 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
CACNA1AO00555 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
CACNA1AO00555 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.33
CACNA1AO00555 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.08■□□□□ 0.33
CACNA1AO00555 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.08■□□□□ 0.33
CACNA1AO00555 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.08■□□□□ 0.33
CACNA1AO00555 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.08■□□□□ 0.33
CACNA1AO00555 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC17.08■□□□□ 0.33
CACNA1AO00555 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC17.08■□□□□ 0.32
CACNA1AO00555 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CACNA1AO00555 ME2-208ENST00000638937 2471 ntTSL 5 BASIC17.08■□□□□ 0.32
CACNA1AO00555 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CACNA1AO00555 BCAR1-209ENST00000546196 1340 ntBASIC17.08■□□□□ 0.32
CACNA1AO00555 WRB-204ENST00000398753 699 ntTSL 3 BASIC17.08■□□□□ 0.32
CACNA1AO00555 AC092658.1-201ENST00000505836 891 ntBASIC17.08■□□□□ 0.32
CACNA1AO00555 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
CACNA1AO00555 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.08■□□□□ 0.32
CACNA1AO00555 OR7E47P-204ENST00000575924 449 ntBASIC17.08■□□□□ 0.32
CACNA1AO00555 Six3os1_5.1-201ENST00000611000 271 ntBASIC17.08■□□□□ 0.32
CACNA1AO00555 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CACNA1AO00555 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CACNA1AO00555 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CACNA1AO00555 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CACNA1AO00555 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
CACNA1AO00555 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
CACNA1AO00555 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
CACNA1AO00555 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC17.07■□□□□ 0.32
CACNA1AO00555 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.07■□□□□ 0.32
CACNA1AO00555 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC17.07■□□□□ 0.32
CACNA1AO00555 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.07■□□□□ 0.32
CACNA1AO00555 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC17.07■□□□□ 0.32
CACNA1AO00555 GOLGA2P11-201ENST00000562660 1621 ntBASIC17.07■□□□□ 0.32
CACNA1AO00555 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
CACNA1AO00555 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
CACNA1AO00555 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CACNA1AO00555 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.07■□□□□ 0.32
CACNA1AO00555 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
CACNA1AO00555 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms