Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC188H7C350 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC188H7C350 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CCDC188H7C350 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.03■□□□□ 0.64
CCDC188H7C350 AC009102.3-201ENST00000623118 1491 ntBASIC19.03■□□□□ 0.64
CCDC188H7C350 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
CCDC188H7C350 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC188H7C350 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC188H7C350 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC188H7C350 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC188H7C350 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC188H7C350 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC188H7C350 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CCDC188H7C350 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC19.03■□□□□ 0.64
CCDC188H7C350 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC188H7C350 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC188H7C350 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC188H7C350 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.03■□□□□ 0.64
CCDC188H7C350 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.03■□□□□ 0.64
CCDC188H7C350 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.03■□□□□ 0.64
CCDC188H7C350 CABP2-204ENST00000636477 941 ntTSL 5 BASIC19.03■□□□□ 0.64
CCDC188H7C350 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
CCDC188H7C350 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC188H7C350 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC188H7C350 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC188H7C350 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC188H7C350 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC188H7C350 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.03■□□□□ 0.64
CCDC188H7C350 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC188H7C350 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC188H7C350 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC19.03■□□□□ 0.64
CCDC188H7C350 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC188H7C350 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CCDC188H7C350 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC188H7C350 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC188H7C350 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC188H7C350 PCDHA12-202ENST00000613593 2588 ntBASIC19.02■□□□□ 0.64
CCDC188H7C350 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CCDC188H7C350 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC188H7C350 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC19.02■□□□□ 0.64
CCDC188H7C350 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC188H7C350 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.02■□□□□ 0.64
CCDC188H7C350 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC188H7C350 AL163051.1-201ENST00000569214 1512 ntBASIC19.02■□□□□ 0.64
CCDC188H7C350 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC188H7C350 MIR149-201ENST00000384879 89 ntBASIC19.02■□□□□ 0.64
CCDC188H7C350 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC19.02■□□□□ 0.64
CCDC188H7C350 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
CCDC188H7C350 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC19.02■□□□□ 0.64
CCDC188H7C350 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.02■□□□□ 0.64
CCDC188H7C350 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CCDC188H7C350 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
CCDC188H7C350 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC188H7C350 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CCDC188H7C350 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC188H7C350 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
CCDC188H7C350 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.02■□□□□ 0.63
CCDC188H7C350 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC19.02■□□□□ 0.63
CCDC188H7C350 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 GPAT2P1-201ENST00000444924 1672 ntBASIC19.01■□□□□ 0.63
CCDC188H7C350 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC19.01■□□□□ 0.63
CCDC188H7C350 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC188H7C350 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 AL023806.1-201ENST00000603994 1649 ntBASIC19.01■□□□□ 0.63
CCDC188H7C350 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC188H7C350 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC188H7C350 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.01■□□□□ 0.63
CCDC188H7C350 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC19.01■□□□□ 0.63
CCDC188H7C350 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 AC080080.1-201ENST00000625121 2420 ntBASIC19.01■□□□□ 0.63
CCDC188H7C350 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CCDC188H7C350 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
CCDC188H7C350 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19■□□□□ 0.63
CCDC188H7C350 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC188H7C350 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC19■□□□□ 0.63
CCDC188H7C350 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC188H7C350 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC188H7C350 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC188H7C350 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC188H7C350 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
CCDC188H7C350 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
CCDC188H7C350 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19■□□□□ 0.63
CCDC188H7C350 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
CCDC188H7C350 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19■□□□□ 0.63
CCDC188H7C350 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19■□□□□ 0.63
CCDC188H7C350 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19■□□□□ 0.63
CCDC188H7C350 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19■□□□□ 0.63
CCDC188H7C350 UROS-202ENST00000368778 1556 ntTSL 2 BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms