Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 BX640515.1-201ENST00000617215 977 ntBASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 NME4-212ENST00000621774 904 ntTSL 3 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 Z82202.1-201ENST00000623446 1880 ntBASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC14.14□□□□□ -0.15
NOTCH3Q9UM47 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 MCC-208ENST00000514701 2855 ntTSL 2 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 KRT18P67-201ENST00000432816 1264 ntBASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 LINC00265-3P-201ENST00000447588 903 ntBASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 HOXB1-202ENST00000577092 1414 ntBASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 PNN-202ENST00000553331 656 ntTSL 3 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 MIR3180-5-201ENST00000583743 153 ntBASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 LINC01711-201ENST00000598340 967 ntBASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 REXO1L6P-202ENST00000619970 1078 ntBASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC14.13□□□□□ -0.15
NOTCH3Q9UM47 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
NOTCH3Q9UM47 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms