Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 AC008687.5-201ENST00000593746 558 ntBASIC19.55■□□□□ 0.72
SIX4Q9UIU6 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 AC069148.1-201ENST00000608741 768 ntBASIC19.55■□□□□ 0.72
SIX4Q9UIU6 NPAP1P7-201ENST00000613027 823 ntBASIC19.55■□□□□ 0.72
SIX4Q9UIU6 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 VPS72-207ENST00000640458 689 ntTSL 5 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SIX4Q9UIU6 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 BX276092.5-203ENST00000456199 560 ntBASIC19.54■□□□□ 0.72
SIX4Q9UIU6 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 AL121672.3-201ENST00000608644 468 ntBASIC19.54■□□□□ 0.72
SIX4Q9UIU6 AC132938.6-201ENST00000623828 1655 ntBASIC19.54■□□□□ 0.72
SIX4Q9UIU6 LINC00602-201ENST00000629776 2065 ntBASIC19.54■□□□□ 0.72
SIX4Q9UIU6 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 EFTUD1P1-204ENST00000560401 1798 ntBASIC19.54■□□□□ 0.72
SIX4Q9UIU6 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
SIX4Q9UIU6 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 TSSC2-201ENST00000450217 709 ntBASIC19.53■□□□□ 0.72
SIX4Q9UIU6 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SIX4Q9UIU6 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 AC093010.1-201ENST00000473625 1624 ntBASIC19.52■□□□□ 0.72
SIX4Q9UIU6 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 MIR3180-1-201ENST00000580374 94 ntBASIC19.52■□□□□ 0.72
SIX4Q9UIU6 MIR3180-3-201ENST00000584616 94 ntBASIC19.52■□□□□ 0.72
SIX4Q9UIU6 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.52■□□□□ 0.72
SIX4Q9UIU6 AC093458.2-201ENST00000623150 629 ntBASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms