Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLCF1Q9UBD9 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.26■□□□□ 0.19
CLCF1Q9UBD9 GUSBP12-201ENST00000513727 720 ntBASIC16.26■□□□□ 0.19
CLCF1Q9UBD9 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CLCF1Q9UBD9 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC16.26■□□□□ 0.19
CLCF1Q9UBD9 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLCF1Q9UBD9 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.26■□□□□ 0.19
CLCF1Q9UBD9 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLCF1Q9UBD9 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC16.26■□□□□ 0.19
CLCF1Q9UBD9 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CLCF1Q9UBD9 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CLCF1Q9UBD9 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
CLCF1Q9UBD9 AC099343.3-201ENST00000605834 2503 ntBASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 AP000867.3-201ENST00000524675 377 ntBASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 AC012615.1-201ENST00000565797 1299 ntBASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLCF1Q9UBD9 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 NUS1P1-201ENST00000446295 882 ntBASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 AC124864.1-201ENST00000623408 392 ntBASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 AC233702.3-201ENST00000578656 1387 ntBASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLCF1Q9UBD9 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLCF1Q9UBD9 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.23■□□□□ 0.19
CLCF1Q9UBD9 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.23■□□□□ 0.19
CLCF1Q9UBD9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CLCF1Q9UBD9 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLCF1Q9UBD9 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC16.23■□□□□ 0.19
CLCF1Q9UBD9 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLCF1Q9UBD9 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CLCF1Q9UBD9 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC16.23■□□□□ 0.19
CLCF1Q9UBD9 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms