Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 AC096582.2-201ENST00000510860 516 ntBASIC18.82■□□□□ 0.6
TDP1Q9NUW8 AF238378.1-201ENST00000526806 358 ntBASIC18.82■□□□□ 0.6
TDP1Q9NUW8 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
TDP1Q9NUW8 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 AC114341.1-201ENST00000618070 349 ntBASIC18.81■□□□□ 0.6
TDP1Q9NUW8 AC009154.2-201ENST00000621177 724 ntBASIC18.81■□□□□ 0.6
TDP1Q9NUW8 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
TDP1Q9NUW8 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 CCS-201ENST00000310190 942 ntTSL 5 BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 MRPL3P1-201ENST00000400109 1033 ntBASIC18.8■□□□□ 0.6
TDP1Q9NUW8 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 AP000347.1-202ENST00000435868 847 ntBASIC18.8■□□□□ 0.6
TDP1Q9NUW8 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 AC005336.2-201ENST00000593183 939 ntBASIC18.8■□□□□ 0.6
TDP1Q9NUW8 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 LINC00602-201ENST00000629776 2065 ntBASIC18.8■□□□□ 0.6
TDP1Q9NUW8 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
TDP1Q9NUW8 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 LINC01126-201ENST00000623515 1646 ntBASIC18.79■□□□□ 0.6
TDP1Q9NUW8 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
TDP1Q9NUW8 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TDP1Q9NUW8 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
TDP1Q9NUW8 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
TDP1Q9NUW8 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TDP1Q9NUW8 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TDP1Q9NUW8 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TDP1Q9NUW8 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC18.78■□□□□ 0.6
TDP1Q9NUW8 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TDP1Q9NUW8 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TDP1Q9NUW8 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
TDP1Q9NUW8 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
TDP1Q9NUW8 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms