Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SIX2Q9NPC8 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 AL512604.3-201ENST00000569583 964 ntBASIC19.65■□□□□ 0.74
SIX2Q9NPC8 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 AL157888.1-201ENST00000631930 593 ntBASIC19.65■□□□□ 0.74
SIX2Q9NPC8 AC141257.4-201ENST00000634557 245 ntBASIC19.65■□□□□ 0.74
SIX2Q9NPC8 AC136944.6-201ENST00000634818 245 ntBASIC19.65■□□□□ 0.74
SIX2Q9NPC8 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 AC132938.6-201ENST00000623828 1655 ntBASIC19.65■□□□□ 0.74
SIX2Q9NPC8 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC19.65■□□□□ 0.74
SIX2Q9NPC8 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SIX2Q9NPC8 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 GPX4-207ENST00000589115 812 ntTSL 2 BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SIX2Q9NPC8 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 GNE-204ENST00000539208 2190 ntTSL 2 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 CD70-202ENST00000423145 881 ntTSL 2 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.63■□□□□ 0.73
SIX2Q9NPC8 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 AC010203.1-204ENST00000548782 407 ntBASIC19.63■□□□□ 0.73
SIX2Q9NPC8 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 AC012306.2-201ENST00000609350 630 ntBASIC19.63■□□□□ 0.73
SIX2Q9NPC8 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
SIX2Q9NPC8 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SIX2Q9NPC8 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms